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IBB - Institute for Biotechnology and Bioengineering
CEB - Centre of Biological Engineering - University of Minho		 Universidade do Minho - Escola de Engenharia
 

 

CEB is part of the Institute for Biotechnology and Bioengineering

 
Paulo Jorge Lopes Maia da Silva
Preferred Name:
Paulo Maia
E-Mail Address:
paulo.maia@deb.uminho.pt @deb.uminho.pt
Activity:
PhD UMinho
Project / Theme:
Metabolic Control Analysis as a Framework for Strain Optimization
Start Date: 9/15/2009
End Date: 10/14/2013
Faculty Supervisor: Isabel Rocha
Telephone: Office:604421
Laboratory: 604421
Laboratory: Laboratório de Bioinformática (ENG2)
Office: Laboratório de Bioinformática EENG2
Birthday: July 22nd
Website: http://www.linkedin.com/profile/view?id=19659905
Access after working hours: Yes
Nationality: Portugal
Last Update: 11/23/2010

Selected Publications

1. Vilaça, P.; Maia, P.; Rocha, M.
  A study on the robustness of strain optimization algorithms.
  Advances in Intelligent and Soft Computing [5th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2011)] 93(), 329-336, 2011.
 
2. Lourenço, A.; Carreira, R.; Carneiro, S.; Maia, P.; Glez-Peña, D.; Fdez-Riverola, F.; Ferreira, E.C.; Rocha, I.; Rocha, M.
  A framework for the development of biomedical text mining software tools.
  8th IEEE International Conference on Bioinformatics and Bioengineering. BIBE 2008 (), 1-6, 2008.
 
3. Maia, P.; Rocha, I.; Ferreira, E.C.; Rocha, M.
  Evaluating evolutionary multiobjective algorithms for the in silico optimization of mutant strains.
  8th IEEE International Conference on Bioinformatics and Bioengineering. BIBE 2008 (), 1-6, 2008.
 
4. Maia, P.
  Evolutionary Multiobjective Algorithms for the in silico Optimization of Mutant Strains.
  Master in Bioinformatics (), 1-118, 2009.
 
5. Maia, P.; Pont, M.; Tomb, J.-F.; Rocha, I.; Rocha, M.
  Enhancing Elementary Flux Modes Analysis Using Filtering Techniques in an Integrated Environment.
  Advances in Bioinformatics [4th International Workshop on Practical Applications of Computational Biology & Bioinformatics - IWPACBB 2010. Guimarães, Portugal 16-18 June 2010] Advances in Soft Computing(74), 217-224, 2010.
 
6. Evangelista, P.; Maia, P.; Rocha, M.
  Implementing metaheuristic optimization algorithms with JECoLi.
  9th International Conference on Intelligent Systems Design and Applications - ISDA '09 (art. no. 5364947), 505-510, 2009.
 
7. Rocha, I.; Maia, P.; Evangelista, P.; Vilaça, P.; Soares, S.; Pinto, J.P.; Nielsen, J.; Patil, K.R.; Ferreira, E.C.; Rocha, M.
  OptFlux: an open-source software platform for in silico metabolic engineering.
  BMC Systems Biology 4(45), 1-12, 2010.
 
8. Vilaça, P.; Maia, P.; Rocha, I.; Rocha, M.
  Metaheuristics for strain optimization using transcriptional information enriched metabolic models.
  Lecture Notes in Computer Science 6023(), 205-216, 2010.
 
9. Vilaça, P.; Maia, P.; Evangelista, P.; Ferreira, E.C.; Rocha, Miguel; Rocha, I.
  A study on the effects of using gene-reaction rules on in silico strain optimization.
  Jornadas de Bioinformática JB'2009 - Challenges in Bioinformatics: proceedings (), 175-, 2009.
 
10. Lourenço, A.; Carreira, R.; Carneiro, S.; Maia, P.; Ferreira, E.C.; Rocha, Miguel; Rocha, I.
  The @Note biomedical text mining workbench.
  Workshop Systems Biology in Medicine (European Science Foundation) (), -, 2008.
 
11. Maia, P.; Ferreira, E.C.; Rocha, Miguel; Rocha, I.
  Multi-criterion approaches for the in silico optimization of mutant microorganisms.
  17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 8th European Conference on Computational Biology (ECCB) (), -, 2009.
 
12. Rocha, I.; Maia, P.; Pinto, José P.; Evangelista, P.; Nielsen, Jens; Patil, Kiran Raosaheb; Ferreira, E.C.; Rocha, Miguel
  OptFlux: a software for metabolic engineering.
  17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 8th European Conference on Computational Biology (ECCB) (), -, 2009.
 
13. Lourenço, A.; Carreira, R.; Carneiro, S.; Maia, P.; Glez-Peña, Daniel; Fdez-Riverola, Florentino; Ferreira, E.C.; Rocha, I.; Rocha, Miguel
  @Note: a workbench for biomedical text mining.
  Journal of Biomedical Informatics 42(4), 710-720, 2009.
 
14. Rocha, Miguel; Maia, P.; Mendes, Rui; Pinto, José P.; Ferreira, E.C.; Nielsen, Jens; Patil, Kiran Raosaheb; Rocha, I.
  Natural computation meta-heuristics for the in silico optimization of microbial strains.
  BMC Bioinformatics 04(499), 1471-2105, 2008.
 
15. Rocha, I.; Maia, P.; Rocha, Miguel; Ferreira, E.C.
  OptGene: a framework for in silico metabolic engineering.
  CHEMPOR 2008: Book of Abstracts of the 10th International Chemical and Biological Engineering Conference (Eugénio C. Ferreira & Manuel Mota, Eds.) (), 218-219, 2008.
 
16. Carneiro, S.; Maia, P.; Rocha, Miguel; Ferreira, E.C.; Rocha, I.
  Constraint-based approach for in silico Escherichia coli combined regulatory/metabolic modelling.
  Livro de Actas do Congresso Micro '07 - Biotec '07 - XXIII JPG (), 176-, 2007.
 
17. Rocha, M.; Mendes, R.; Maia, P.; Pinto, J.P.; Rocha, I.; Ferreira, E.C.
  Evaluating simulated annealing algorithms in the optimization of bacterial strains.
  Lecture Notes in Computer Science 4874(), 473-484, 2007.