DEB   IBB   EEUM   UMinho    Contacts | Webmail | Virtual visit | Intranet | Intranet UM | SIEEUM
IBB - Institute for Biotechnology and Bioengineering
CEB - Centre of Biological Engineering
- University of Minho
Universidade do Minho - Escola de Engenharia
Rafael de Castro Carreira
Preferred Name:
Rafael Carreira
E-Mail Address:
rafaelcc@deb.uminho.pt @deb.uminho.pt
Activity:
PhD UMinho
Project / Theme:
Developing Computational Tools to Explore the Synergies between Systems Biology and Metabolome Analysis
Start Date: 2/1/2010
End Date: 1/31/2014
Faculty Supervisor: Isabel Rocha
Telephone: Office:604421
Laboratory: 604421
Laboratory: Laboratório de Bioinformática (ENG2)
Office: Laboratório de Bioinformática EENG2
Birthday: September 9th
Website:
Access after working hours: Yes
Nationality: Portugal
Last Update: 9/20/2011

Selected Publications

1. Lourenço, A.; Carreira, R.; Carneiro, S.; Maia, P.; Glez-Peña, D.; Fdez-Riverola, F.; Ferreira, E.C.; Rocha, I.; Rocha, M.
  A framework for the development of biomedical text mining software tools.
  8th IEEE International Conference on Bioinformatics and Bioengineering. BIBE 2008 (), 1-6, 2008.
 
2. Lourenço, A.; Carneiro, S.; Carreira, R.; Rocha, M.; Rocha, I.; Ferreira, E.C.
  Bringing text miners and biologists closer together.
  3rd International Biocuration Conference (), -, 2009.
 
3. Lourenço, A.; Carneiro, S.; Ferreira, E.C.; Carreira, R.; Rocha, L.M.; Glez-Peña, D.; Méndez, J.R.; Fdez-Riverola, F.; Diaz, F.; Rocha, I.; Rocha, M.
  Biomedical text mining applied to document retrieval and semantic indexing.
  IWANN 2009, Part II, (S. Omatu et al., Eds.) [3rd International Workshop on Practical Applications of Computational Biology & Bioinformatics - IWPACBB'09] Lecture Notes in Computer Science(5518), 954-963, 2009.
 
4. Carneiro, S.; Lourenço, A.; Carreira, R.; Rocha, Miguel; Ferreira, E.C.; Rocha, I.
  Digging out evidences on Escherichia coli stringent response from scientific literature.
  Book of Abstracts of MicroBiotec09 (), 30-, 2009.
 
5. Lourenço, A.; Carreira, R.; Glez-Peña, Daniel; Méndez, José R.; Carneiro, S.; Rocha, Luis M.; Díaz, Fernando; Ferreira, E.C.; Rocha, I.; Rocha, Miguel; Fdez-Riverola, Florentino
  BioDR: semantic indexing networks for biomedical document retrieval.
  Expert Systems with Applications 37(4), 3444-3453, 2010.
 
6. Lourenço, A.; Carreira, R.; Carneiro, S.; Maia, P.; Ferreira, E.C.; Rocha, Miguel; Rocha, I.
  The @Note biomedical text mining workbench.
  Workshop Systems Biology in Medicine (European Science Foundation) (), -, 2008.
 
7. Lourenço, A.; Costa, Hugo; Carneiro, S.; Carreira, R.; Rocha, Miguel; Ferreira, E.C.; Rocha, I.
  Combining syntactic and ontological knowledge to extract biologically relevant relations from scientific papers.
  17th Annual International Conference on Intelligent Systems for Molcular Biology & 8th European Conference on Computational Biology ISBMECCB 2009, Special Interest Group Meeting Program Materials (), 237-240, 2009.
 
8. Carneiro, S.; Lourenço, A.; Carreira, R.; Rocha, Miguel; Ferreira, E.C.; Rocha, I.
  Uncovering mechanisms underlying the Escherichia coli stringent response: application of text mining approaches to identify meaningful relations in text documents.
  International Conference on Microbial Stress: from Molecules to Systems: Book of Abstracts (), -, 2009.
 
9. Lourenço, A.; Carreira, R.; Carneiro, S.; Maia, P.; Glez-Peña, Daniel; Fdez-Riverola, Florentino; Ferreira, E.C.; Rocha, I.; Rocha, Miguel
  @Note: a workbench for biomedical text mining.
  Journal of Biomedical Informatics 42(4), 710-720, 2009.
 
10. Lourenço, A.; Carneiro, S.; Carreira, R.; Rocha, Miguel; Rocha, I.; Ferreira, E.C.
  A tool for the automatic and manual annotation of biomedical documents.
  Proceedings of the Third International Symposium on Semantic Mining in Biomedicine – SMBM 2008 (), 97-104, 2008.