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IBB - Institute for Biotechnology and Bioengineering
CEB - Centre of Biological Engineering - University of Minho		 Universidade do Minho - Escola de Engenharia
 

 

CEB is part of the Institute for Biotechnology and Bioengineering

 
Oscar Manuel Lima Dias
Preferred Name:
Oscar Dias
E-Mail Address:
odias@deb.uminho.pt @deb.uminho.pt
Activity:
PhD UMinho
Project / Theme:
Reconstruction of the Genome-scale Metabolic Network of Kluyveromyces lactis
Start Date: 1/28/2009
End Date: 1/27/2013
Faculty Supervisor: Isabel Rocha
Telephone: Office:604421
Laboratory: 604421
Laboratory: Laboratório de Bioinformática (ENG2)
Office: Laboratório de Bioinformática EENG2
Birthday: March 8th
Website: http://biopseg.ceb.uminho.pt/OscarDias/
Access after working hours: Yes
Nationality: Portugal
Last Update: 9/16/2011

Selected Publications

1. Dias, O.; Ferreira, E.C.; Rocha, I.
  Towards genome-wide semi-automated transporter system annotations.
  12th International Conference on Systems Biology – ICSB 2011 (), -, 2011.
 
2. Dias, O.; Rocha, M.; Ferreira, E.C.; Rocha, I.
  Merlin: Metabolic models reconstruction using genome-scale information.
  IFAC Proceedings Volumes (IFAC-PapersOnline), (Proceedings of the 11th International Symposium on Computer Applications in Biotechnology - CAB 2010) 11(PART 1), 120-125, 2010.
 
3. Mesquita, D.P.; Dias, O.; Elias, R.A.V; Amaral, A.L.; Ferreira, E.C.
  Dilution and magnification effects on image analysis applications in activated sludge characterization.
  Microscopy and Microanalysis 16(5), 561-568, 2010.
 
4. Mesquita, D.P.; Dias, O.; Amaral, A.L.; Ferreira, E.C.
  A comparison between bright field and phase-contrast image analysis techniques in activated sludge morphological characterization.
  Microscopy and Microanalysis 16(2), 166-174, 2010.
 
5. Dias, O.; Rocha, Miguel; Rocha, I.; Ferreira, E.C.
  Metabolic reconstruction of less characterized microorganisms: a new methodology for reaction identification from genome sequencing data.
  Jornadas de Bioinformática JB'2009 - Challenges in Bioinformatics: proceedings (), 57-, 2009.
 
6. Mesquita, D.P.; Dias, O.; Dias, A.; Amaral, A.L.; Ferreira, E.C.
  Correlation between sludge settling ability and image analysis information using partial least squares.
  Analytica Chimica Acta 642(1-2), 94-101, 2009.
 
7. Mesquita, D.P.; Dias, O.; Amaral, A.L.; Ferreira, E.C.
  Monitoring of activated sludge settling ability through image analysis: validation on full-scale wastewater treatment plants.
  Bioprocess and Biosystems Engineering 32(3), 361-367, 2009.
 
8. Mesquita, D.P.; Dias, O.; Amaral, A.L.; Ferreira, E.C.
  Bright field versus phase contrast microscopy in activated sludge image acquisition methodologies.
  CHEMPOR 2008: Proceedings of the 10th International Chemical and Biological Engineering Conference (Eugénio C. Ferreira & Manuel Mota, Eds.) (), 1778-1783, 2008.
 
9. Pinto, José P.; Dias, O.; Lourenço, A.; Carneiro, S.; Ferreira, E.C.; Rocha, I.; Rocha, Miguel
  Data integration issues in the reconstruction of the genome-scale metabolic model of Zymomonas mobillis.
  2nd International Workshop on Practical Applications of Computational Biology and Bioinformatics (IWPACBB 2008) Advances in Soft Computing(49), 92-101, 2009.
 
10. Mesquita, D.P.; Dias, O.; Amaral, A.L.; Ferreira, E.C.
  Relationship between sludge volume index and biomass structure within activated sludge systems.
  Anais do XVII Congresso Brasileiro de Engenharia Química - COBEQ 2008 CD-ROM(), 1-7, 2008.
 
11. Mesquita, D.P.; Dias, O.; Dias, A.; Amaral, A.L.; Ferreira, E.C.
  Correlation between sludge settleability and image analysis information using Partial Least Squares.
  Proceedings of the 11th International Conference on Chemometrics in Analytical Chemistry - CAC2008 4(), 175-179, 2008.
 
12. Mesquita, D.P.; Dias, O.; Amaral, A.L.; Ferreira, E.C.
  Evaluation of activated sludge systems by image analysis procedures.
  Proceedings of the International Symposium on Sanitary and Environmental Engineering: SIDISA 08 [CD-ROM] (), 1-8, 2008.
 
13. Dias, O.; Mesquita, D.P.; Amaral, A.L.; Ferreira, E.C.
  Dilution effects on aggregates and filaments contents in automated image analysis methodologies.
  Proceedings of the International Symposium on Sanitary and Environmental Engineering: SIDISA 08 [CD-ROM] (), 1-8, 2008.
 
14. Mesquita, D.P.; Dias, O.; Amaral, A.L.; Ferreira, E.C.
  Monitoring activated sludge systems from wastewater treatment plants: automated image analysis procedures and their relation with operating parameters.
  Livro de Actas do Congresso Micro '07 - Biotec '07 - XXIII JPG (), 146-, 2007.