Qualifications

  • 2015: PhD Program in Bioengineering, Universidade do Minho
  • 2009: Master Program in Bioinformatics - Biological Sciences, Universidade do Minho
  • 2007: Licenciatura Engenharia Informática, Universidade do Minho

Recent Publications

1
Comparison of pathway analysis and constraint-based methods for cell factory design
  • BMC Bioinformatics, 20(350), 2019
2
Turnover dependent phenotypic simulation: a quantitative constraint-based simulation method that accommodates all main strain design strategies
  • ACS Synthetic Biology, 8(5), 976-988, 2019
3
Yeast chassis design for production of dicarboxylic acids
  • New Biotechnology, 44(Suppl.), S8, 2018
4
A review of dynamic modeling approaches and their application in computational strain optimization for metabolic engineering
  • Frontiers in Microbiology, 9, 1690-1690, 2018
5
Development of a framework for metabolic pathway analysis-driven strain optimization methods
  • Interdisciplinary Sciences-Computational Life Sciences, 9(1), 46-55, 2017
6
In silico constraint-based strain optimization methods: the quest for optimal cell factories
  • Microbiology and Molecular Biology Reviews, 80(1), 45-67, 2016
7
CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data
  • BMC Systems Biology, 8(123), 2014
8
An integrated computational environment for elementary modes analysis of biochemical networks
  • International Journal of Data Mining and Bioinformatics, 6(4), 382-395, 2012
9
A study on the robustness of strain optimization algorithms
  • Advances in Intelligent and Soft Computing, 93, 329-336, 2011
10
OptFlux: an open-source software platform for in silico metabolic engineering
  • BMC Systems Biology, 4(45), 1-12, 2010
11
Metaheuristics for strain optimization using transcriptional information enriched metabolic models
  • Lecture Notes in Computer Science, 6023, 205-216, 2010
12
Enhancing Elementary Flux Modes analysis using filtering techniques in an integrated environment
  • Advances in Intelligent and Soft Computing, 74, 217-224, 2010
13
  • Rocha, M.; Glez-Peña, D.; Reboiro-Jato, M.; Maia, P.; Díaz, F.; Fdez-Riverola, F.
AIBench: a rapid application development framework for translational research in biomedicine
  • Computer Methods and Programs in Biomedicine, 98(2), 191-203, 2010
14
@Note: a workbench for biomedical text mining
  • Journal of Biomedical Informatics, 42(4), 710-720, 2009
15
Natural computation meta-heuristics for the in silico optimization of microbial strains
  • BMC Bioinformatics, 9(499), 2008
16
Evaluating simulated annealing algorithms in the optimization of bacterial strains
  • Lecture Notes in Computer Science, 4874, 473-484, 2007
Full List