Rui Pereira

PhD Student


Qualifications

  • 2015: PhD Program on Bioengineering, Universidade do Minho
  • 2010 - 2015: Improvement of in silico strain engineering methods in Saccharomyces cerevisiae

Past Students


Recent Publications

1
Turnover dependent phenotypic simulation: a quantitative constraint-based simulation method that accommodates all main strain design strategies
  • ACS Synthetic Biology, 8(5), 976-988, 2019
2
Improving the flux distributions simulated with genome-scale metabolic models of Saccharomyces cerevisiae
  • Metabolic Engineering Communications, 3, 153-163, 2016
3
  • López, Javiera; Essus, Karen; Kim, Il-kwon; Pereira, Rui; Herzog, Jan; Siewers, Verena; Nielsen, Jens; Agosin, Eduardo
Production of β-ionone by combined expression of carotenogenic and plant CCD1 genes in Saccharomyces cerevisiae
  • Microbial Cell Factories, 14(84), 1-13, 2015
4
iOD907, the first genome-scale metabolic model for the milk yeast Kluyveromyces lactis
  • Biotechnology Journal, 9(6), 776-790, 2014
5
TNA4OptFlux - a software tool for the analysis of strain optimization strategies
  • BMC Research Notes, 6(175), 1-13, 2013
6
Optimization approaches for the in silico discovery of optimal targets for gene over/underexpression
  • Journal of Computational Biology, 19(2), 102-114, 2012
7
Semantic annotation of biological concepts interplaying microbial cellular responses
  • BMC Bioinformatics, 12(460), 2011
Full List