People

Paulo Maia

Collaborator (PhD)

Research Line: Industrial Biotechnology and Bioengineering
Research Group: BIOSYSTEMS
Supervisor: IR
pmaia@silicolife.com
http://ceb.uminho.pt/People/Profile/paulomaia

Qualifications

2015: PhD Program in Bioengineering, Universidade do Minho
2009: Master Program in Bioinformatics - Biological Sciences, Universidade do Minho
2007: Licenciatura Engenharia Informática, Universidade do Minho

2016 - 2020: Systems biology
2009 - 2015: Algorithms and Tools for in silico Design of Cell Factories

Past Projects

Recent Publications

1	Kim, Osvaldo D.; Rocha, Miguel; Maia, Paulo A review of dynamic modeling approaches and their application in computational strain optimization for metabolic engineering Frontiers in Microbiology, 9, 1690-1690, 2018
2	Vieira, Vitor; Maia, Paulo; Rocha, Isabel; Rocha, Miguel Development of a framework for metabolic pathway analysis-driven strain optimization methods Interdisciplinary Sciences-Computational Life Sciences, 9(1), 46-55, 2017
3	Maia, Paulo; Rocha, Miguel; Rocha, Isabel In silico constraint-based strain optimization methods: the quest for optimal cell factories Microbiology and Molecular Biology Reviews, 80(1), 45-67, 2016
4	Carreira, R.; Evangelista, P.; Maia, P.; Vilaça, P.; Pont, Marcellinus; Tomb, Jean-François; Rocha, I.; Rocha, M. CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data BMC Systems Biology, 8(123), 2014
5	Maia, P.; Vilaça, P.; Rocha, I.; Pont, M.; Tomb, J.-F.; Rocha, M. An integrated computational environment for elementary modes analysis of biochemical networks International Journal of Data Mining and Bioinformatics, 6(4), 382-395, 2012
6	Vilaça, P.; Maia, P.; Rocha, M. A study on the robustness of strain optimization algorithms Advances in Intelligent and Soft Computing, 93, 329-336, 2011
7	Rocha, Isabel; Maia, P.; Evangelista, P.; Vilaça, P.; Soares, Simão; Pinto, J.P.; Nielsen, J.; Patil, K.R.; Ferreira, E.C.; Rocha, M. OptFlux: an open-source software platform for in silico metabolic engineering BMC Systems Biology, 4(45), 1-12, 2010
8	Vilaça, P.; Maia, P.; Rocha, I.; Rocha, M. Metaheuristics for strain optimization using transcriptional information enriched metabolic models Lecture Notes in Computer Science, 6023, 205-216, 2010
9	Maia, P.; Pont, M.; Tomb, J.-F.; Rocha, I.; Rocha, M. Enhancing Elementary Flux Modes analysis using filtering techniques in an integrated environment Advances in Intelligent and Soft Computing, 74, 217-224, 2010
10	Rocha, M.; Glez-Peña, D.; Reboiro-Jato, M.; Maia, P.; Díaz, F.; Fdez-Riverola, F. AIBench: a rapid application development framework for translational research in biomedicine Computer Methods and Programs in Biomedicine, 98(2), 191-203, 2010
11	Lourenço, A.; Carreira, R.; Carneiro, S.; Maia, P.; Glez-Peña, D.; Fdez-Riverola, F.; Ferreira, E.C.; Rocha, I.; Rocha, M. @Note: a workbench for biomedical text mining Journal of Biomedical Informatics, 42(4), 710-720, 2009
12	Rocha, M.; Maia, P.; Mendes, R.; Pinto, J.P.; Ferreira, E.C.; Nielsen, J.; Patil, K.R.; Rocha, I. Natural computation meta-heuristics for the in silico optimization of microbial strains BMC Bioinformatics, 9(499), 2008
13	Rocha, M.; Mendes, R.; Maia, P.; Pinto, J.P.; Rocha, I.; Ferreira, E.C. Evaluating simulated annealing algorithms in the optimization of bacterial strains Lecture Notes in Computer Science, 4874, 473-484, 2007

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Universidade do Minho
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