Paulo Vilaça

PhD Student


Qualifications

  • Ongoing: PhD Program in Computer Science MAP-i, Universidade do Minho

  • 2010 - 2019: Computer Aided Design of Metabolic Pathways
  • 2009 - 2011: Bridging Systems and Synthetic Biology for the development of Improved Microbial Cell Factories


Recent Publications

1
  • Bauer, Claudia M.; Vilaça, Paulo; Ramlov, Fernanda; de Oliveira, Eva Regina; Cabral, Débora Q.; Schmitz, Caroline; Corrêa, Rafaela Gordo; Rocha, Miguel; Maraschin, Marcelo
In silico predictions for fucoxanthin production by the diatom Phaeodactylum tricornutum
  • Advances in Intelligent Systems and Computing, 803 (PACBB 2018), 139-148, 2019
2
Reconstruction of a genome-scale metabolic model for Actinobacillus succinogenes 130Z
  • BMC Systems Biology, 12(61), 2018
3
A critical evaluation of automatic atom mapping algorithms and tools
  • Advances in Intelligent Systems and Computing, 616 (PACBB 2017), 257-264, 2017
4
Genome-wide semi-automated annotation of transporter systems
  • IEEE/ACM Transactions on Computational Biology and Bioinformatics, 14(2), 443-456, 2017
5
Development and application of efficient pathway enumeration algorithms for metabolic engineering applications
  • Computer Methods and Programs in Biomedicine, 118(2), 134-146, 2015
6
An integrated network visualization framework towards metabolic engineering applications
  • BMC Bioinformatics, 15(6594), 2014
7
CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data
  • BMC Systems Biology, 8(123), 2014
8
Evaluating pathway enumeration algorithms in metabolic engineering case studies
  • Advances in Intelligent Systems and Computing, 294, 215-223, 2014
9
Network Visualization Tools to Enhance Metabolic Engineering Platforms
  • Advances in Intelligent Systems and Computing, 222, 137-144, 2013
10
An integrated computational environment for elementary modes analysis of biochemical networks
  • International Journal of Data Mining and Bioinformatics, 6(4), 382-395, 2012
11
A computational tool for the simulation and optimization of microbial strains accounting integrated metabolic/regulatory information
  • BioSystems, 103(3), 435-441, 2011
12
A study on the robustness of strain optimization algorithms
  • Advances in Intelligent and Soft Computing, 93, 329-336, 2011
13
OptFlux: an open-source software platform for in silico metabolic engineering
  • BMC Systems Biology, 4(45), 1-12, 2010
14
Metaheuristics for strain optimization using transcriptional information enriched metabolic models
  • Lecture Notes in Computer Science, 6023, 205-216, 2010
Full List