People

Paulo Vilaça

PhD Student

Research Line: Industrial Biotechnology and Bioengineering
Research Group: BIOSYSTEMS
Supervisor: MR
paulo.r.c.vilaca@gmail.com

Qualifications

Ongoing: PhD Program in Computer Science MAP-i, Universidade do Minho

2010 - 2019: Computer Aided Design of Metabolic Pathways
2009 - 2011: Bridging Systems and Synthetic Biology for the development of Improved Microbial Cell Factories

Recent Publications

1	Bauer, Claudia M.; Vilaça, Paulo; Ramlov, Fernanda; de Oliveira, Eva Regina; Cabral, Débora Q.; Schmitz, Caroline; Corrêa, Rafaela Gordo; Rocha, Miguel; Maraschin, Marcelo In silico predictions for fucoxanthin production by the diatom Phaeodactylum tricornutum Advances in Intelligent Systems and Computing, 803 (PACBB 2018), 139-148, 2019
2	Pereira, Bruno; Miguel, Joana; Vilaça, Paulo; Simão Soares; Rocha, Isabel; Carneiro, Sónia Reconstruction of a genome-scale metabolic model for Actinobacillus succinogenes 130Z BMC Systems Biology, 12(61), 2018
3	Osório, Nuno; Vilaça, Paulo; Rocha, Miguel A critical evaluation of automatic atom mapping algorithms and tools Advances in Intelligent Systems and Computing, 616 (PACBB 2017), 257-264, 2017
4	Dias, Oscar; Gomes, Daniel G.; Vilaça, Paulo; Cardoso, João; Rocha, Miguel; Ferreira, Eugénio C.; Rocha, Isabel Genome-wide semi-automated annotation of transporter systems IEEE/ACM Transactions on Computational Biology and Bioinformatics, 14(2), 443-456, 2017
5	Liu, F.; Vilaça, P.; Rocha, Isabel; Rocha, M. Development and application of efficient pathway enumeration algorithms for metabolic engineering applications Computer Methods and Programs in Biomedicine, 118(2), 134-146, 2015
6	Noronha, Alberto; Vilaça, P.; Rocha, M. An integrated network visualization framework towards metabolic engineering applications BMC Bioinformatics, 15(6594), 2014
7	Carreira, R.; Evangelista, P.; Maia, P.; Vilaça, P.; Pont, Marcellinus; Tomb, Jean-François; Rocha, I.; Rocha, M. CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data BMC Systems Biology, 8(123), 2014
8	Liu, F.; Vilaça, P.; Rocha, I.; Rocha, M. Evaluating pathway enumeration algorithms in metabolic engineering case studies Advances in Intelligent Systems and Computing, 294, 215-223, 2014
9	Noronha, Alberto; Vilaça, Paulo; Rocha, M. Network Visualization Tools to Enhance Metabolic Engineering Platforms Advances in Intelligent Systems and Computing, 222, 137-144, 2013
10	Maia, P.; Vilaça, P.; Rocha, I.; Pont, M.; Tomb, J.-F.; Rocha, M. An integrated computational environment for elementary modes analysis of biochemical networks International Journal of Data Mining and Bioinformatics, 6(4), 382-395, 2012
11	Vilaça, P.; Rocha, I.; Rocha, M. A computational tool for the simulation and optimization of microbial strains accounting integrated metabolic/regulatory information BioSystems, 103(3), 435-441, 2011
12	Vilaça, P.; Maia, P.; Rocha, M. A study on the robustness of strain optimization algorithms Advances in Intelligent and Soft Computing, 93, 329-336, 2011
13	Rocha, Isabel; Maia, P.; Evangelista, P.; Vilaça, P.; Soares, Simão; Pinto, J.P.; Nielsen, J.; Patil, K.R.; Ferreira, E.C.; Rocha, M. OptFlux: an open-source software platform for in silico metabolic engineering BMC Systems Biology, 4(45), 1-12, 2010
14	Vilaça, P.; Maia, P.; Rocha, I.; Rocha, M. Metaheuristics for strain optimization using transcriptional information enriched metabolic models Lecture Notes in Computer Science, 6023, 205-216, 2010

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Universidade do Minho
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