Paulo Vilaça

PhD Student


Qualifications

  • Ongoing: PhD Program in Computer Science MAP-i, Universidade do Minho

  • Ongoing: Computer Aided Design of Metabolic Pathways
  • 2009 - 2011: Bridging Systems and Synthetic Biology for the development of Improved Microbial Cell Factories


Recent Publications

1
Genome-wide semi-automated annotation of transporter systems
  • IEEE/ACM Transactions on Computational Biology and Bioinformatics, (In Press), 2017
2
Development and application of efficient pathway enumeration algorithms for metabolic engineering applications
  • Computer Methods and Programs in Biomedicine, 118(2), 134-146, 2015
3
An integrated network visualization framework towards metabolic engineering applications
  • BMC Bioinformatics, 15(6594), 2014
4
CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data
  • BMC Systems Biology, 8(123), 2014
5
Evaluating pathway enumeration algorithms in metabolic engineering case studies
  • Advances in Intelligent Systems and Computing, 294, 215-223, 2014
6
Network Visualization Tools to Enhance Metabolic Engineering Platforms
  • Advances in Intelligent Systems and Computing, 222, 137-144, 2013
7
An integrated computational environment for elementary modes analysis of biochemical networks
  • International Journal of Data Mining and Bioinformatics, 6(4), 382-395, 2012
8
A computational tool for the simulation and optimization of microbial strains accounting integrated metabolic/regulatory information
  • BioSystems, 103(3), 435-441, 2011
9
A study on the robustness of strain optimization algorithms
  • Advances in Intelligent and Soft Computing, 93, 329-336, 2011
10
OptFlux: an open-source software platform for in silico metabolic engineering
  • BMC Systems Biology, 4(45), 1-12, 2010
11
Metaheuristics for strain optimization using transcriptional information enriched metabolic models
  • Lecture Notes in Computer Science, 6023, 205-216, 2010
Full List