• 210 RESULTS
  • List:
  • 25
  • 50
  • 100
  • Sort:
  • Author
  • Date
  • Title
  • Recently added
  • Source
1
Comparing results obtained from the Pathway Activity Profiling (PAPi) algorithm with 13C-based metabolic flux analysis
  • 7th International Conference of the Metabolomics Society. Cairns, Australia, June 27-30, 49-49, 2011
2
Development of text mining tools for information retrieval and extraction from patents
  • BOD 2017 - Bioinformatics Open Days (Book Conference). Braga, Feb 23-24, 2017
3
Development of an information retrieval tool for biomedical patents
  • Computer Methods and Programs in Biomedicine, 159, 125-134, 2018
4
Development of text mining tools for information retrieval from patents
  • Advances in Intelligent Systems and Computing, 616 (PACBB 2017), 66-73, 2017
5
Metagenomic analysis of the saliva microbiome with merlin
  • Advances in Intelligent Systems and Computing, 294, 191-199, 2014
6
  • Bauer, Claudia M.; Vilaça, Paulo; Ramlov, Fernanda; de Oliveira, Eva Regina; Cabral, Débora Q.; Schmitz, Caroline; Corrêa, Rafaela Gordo; Rocha, Miguel; Maraschin, Marcelo
In silico predictions for fucoxanthin production by the diatom Phaeodactylum tricornutum
  • Advances in Intelligent Systems and Computing, 803 (PACBB 2018), 139-148, 2019
7
  • Cabral, Debora; Cardoso, Sara; Rocco, Silvana; Sforça, Maurício; Hengeltraub, Simone Fanan; Bauer, Cláudia; Rocha, Miguel; Maraschin, Marcelo
17α-ethinylestradiol analysis of endo- and exometabolome of Ulva lactuca (chlorophyta) by 1H-NMR spectroscopy and bioinformatics tools
  • Advances in Intelligent Systems and Computing, 803 (PACBB 2018), 216-223, 2019
8
A review on metabolomics data analysis for cancer applications
  • Advances in Intelligent Systems and Computing, 803 (PACBB 2018), 157-165, 2019
9
A chemometrics approach for nuclear magnetic resonance data to characterize the partial metabolome banana peels from southern Brazil
  • Journal of Integrative Bioinformatics, 14(4, SI), 2017
10
Characterization of the chemical composition of banana peels from southern Brazil across the seasons using nuclear magnetic resonance and chemometrics
  • Advances in Intelligent Systems and Computing, 616 (PACBB 2017), 321-328, 2017
11
Metabolic Pathway Analysis 2015 - Programme and Abstracts
  • Braga: Biochemical Society, 2015.
12
Constraint-based approach for in silico Escherichia coli combined regulatory/metabolic modelling
  • Micro '07 - Biotec '07 - XXIII JPG: Livro de Actas do Congresso. Lisboa, Portugal, 30 Nov. - 2 Dec., 176, 2007
13
Uncovering mechanisms underlying the Escherichia coli stringent response: application of text mining approaches to identify meaningful relations in text documents
  • International Conference on Microbial Stress: from Molecules to Systems: Book of Abstracts. 2009
14
Digging out evidences on Escherichia coli stringent response from scientific literature
  • MicroBiotec09 - Book of Abstracts. Vilamoura, Portugal, 28-30 Nov, 30, 2009. ISBN: 978-972-97810-6-3
15
Network analysis of an integrated metabolic/regulatory model of Escherichia coli
  • Workshop Systems Biology in Medicine (European Science Foundation). Barcelona, Spain, May 8-10, 2008
16
An integrated analysis of the metabolic and regulatory networks of Escherichia coli K12
  • ICSB 2008 - Abstract Book of the 9th International Conference on Systems Biology. No. DS2-94, Göteborg, Sweden, August 23-27, 146, 2008
17
Semantic annotation of biological concepts interplaying microbial cellular responses
  • BMC Bioinformatics, 12(460), 2011
18
13C-based Metabolic Flux Analysis
  • Bioinformatics Open Days 2012. Braga, Portugal, 1-2 March, 49, 2012
19
CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data
  • BMC Systems Biology, 8(123), 2014
20
Flexible and user friendly tools for the incorporation of fluxomics data into metabolic models
  • Metabolic Engineering X. No. 15, Vancouver, Canada, June 15-19, 10-11, 2014
21
Algorithms to infer metabolic flux ratios from fluxomics data
  • BIBM 2013 - IEEE International Conference on Bioinformatics and Biomedicine. Shanghai, China, 18-21 Dec., 205-209, 2013
22
Bioinformatics Open Days 2012 - Detailed Program
  • Braga: Universidade do Minho, 2012.
23
Artificial intelligence in biological activity prediction
  • Advances in Intelligent Systems and Computing, 1005 (PACBB 2019), 164-172, 2019
24
OptimModels: a framework for strain optimization using kinetic models
  • Book of Abstracts of CEB Annual Meeting 2017. Braga, 6 July, 2017. ISBN: 978-989-97478-8-3
25
Evaluation of methods for the reconstruction of specific models from omics data
  • MPA2015 - Metabolic Pathway Analysis: Programme and Abstracts. No. MPA_09, Braga, Portugal, June 8-12, 21, 2015
26
A critical evaluation of methods for the reconstruction of tissue-specific models
  • Lecture Notes in Computer Science, 9273, 340-352, 2015
27
Specmine: an R package for metabolomics and spectral data analysis and mining
  • Book of Abstracts of CEB Annual Meeting 2017. Braga, 6 July, 63, 2017. ISBN: 978-989-97478-8-3
28
An R package for integrated analysis of metabolomics and spectral data
  • Bioinformatics Open Days 2016 - Book of Abstracts. Braga, Portugal, Feb 18-19, 27-27, 2016
29
An R package for the integrated analysis of metabolomics and spectral data
  • Computer Methods and Programs in Biomedicine, 129, 117-124, 2016
30
An integrated computational platform for metabolomics data analysis
  • Advances in Intelligent Systems and Computing, 375, 37-47, 2015
31
@Note2 – open-source computational tools for biomedical text mining
  • ISMB/ECCB 2015 - 23rd Annual International Conference on Intelligent Systems for Molecular Biology, 14th European Conference on Computational Biology. No. TT19, Dublin, Ireland, July 10-14, 2015
32
Towards the reconstruction of integrated genome-scale models of metabolism and gene expression
  • Advances in Intelligent Systems and Computing, 1005 (PACBB 2019), 173-181, 2019
33
The metabolic model of the Quercus suber (cork oak tree) leaf
  • BOD 1018 - VIII Bioinformatics Open Days. Braga, Portugal, Feb 20-22, 14-16, 2019
34
Assembling genome-wide transporter system annotations
  • Bioinformatics Open Days 2012. Braga, Portugal, 1-2 March, 43-43, 2012
35
Prediction of protein subunits using KEGG BRITE
  • COBRA 2014 - 3rd Conference on Constraint-Based Reconstruction and Analysis. Charlottesville, VA, USA, May 20-23, 2014
36
Metabolic reconstruction of less characterized microorganisms: a new methodology for reaction identification from genome sequencing data
  • JB'2009 - Jornadas de Bioinformática: Challenges in Bioinformatics. Lisboa, Portugal, 3 Nov, 57, 2009
37
Genome-wide semi-automated annotation of transporter systems
  • IEEE-ACM Transactions on Computational Biology and Bioinformatics, 14(2), 443-456, 2017
38
Reconstructing genome-scale metabolic models with merlin
  • Nucleic Acids Research, 43(8), 3899-3910, 2015
39
MEtabolic models Reconstruction using genome scaLe INformation (merlin) - assessment and validation
  • Copenhagen Biosciences Conferences - 7th Conference: Cell Factories and Biosustainability - Abstract Book. Copenhagen, Denmark, May 5-8, 99-100, 2015
40
Merlin Latest Developments for Pathways Analysis
  • MPA2015 - Metabolic Pathway Analysis: Programme and Abstracts. No. MPA_54, Braga, Portugal, June 8-12, 43, 2015
41
Merlin: Metabolic models reconstruction using genome-scale information
  • CAB 2010 - Proceedings of the 11th International Symposium on Computer Applications in Biotechnology. Vol. IFAC Proceedings Volumes 43(6), Leuven, Belgium, July 7-9, 120-125, 2010
42
Reconstructing high-quality large-scale metabolic models with merlin
  • In Marco Fondi. Metabolic Network Reconstruction and Modeling: Methods and Protocols, Vol. Methods in Molecular Biology 1716, Springer, 2018. ISBN: 978-1-4939-7528-0, 1-36
43
A software platform for evolutionary computation with pluggable parallelism and quality assurance
  • IFIP International Conference on Artificial Intelligence Applications and Innovations. Vol. IFIPAICT 364(Part 2), Corfu, Greece, Sep 15-18, 45-50, 2011
44
Implementing metaheuristic optimization algorithms with JECoLi
  • ISDA 2009 - 9th International Conference on Intelligent Systems Design and Applications. No. art. no. 5364947, Pisa, Nov 30 - Dec 2, 505-510, 2009
45
A software tool for the simulation and optimization of dynamic metabolic models
  • Lecture Notes in Computer Science, No. 5518, 1071-1078, 2009
46
Metabolic engineering approaches for strain optimization using evolutionary computation techniques
  • FEBS-SystemsX-SysBio2011: From Molecules to Function - Joint FEBS/SystemsX Advanced Lecture Course on Systems Biology. Innsbruck, Austria, Feb. 26 - March 4, 2011
47
Evolutionary approaches for strain optimization using dynamic models under a metabolic engineering perspective
  • Lecture Notes in Computer Science, 5483, 140-151, 2009
48
Evolutionary computation for predicting optimal reaction knockouts and enzyme modulation strategies
  • CEC 2013 - IEEE Congress on Evolutionary Computation. Cancun, Mexico, 20-23 June, 1225-1232, 2013. ISBN: 978-1-4799-0453-2
49
Metabolic engineering approaches for strain optimization using evolutionary computation techniques
  • Semana da Escola de Engenharia 2011 - Uma Escola a Reinventar o Futuro. Guimarães, Portugal, Oct. 24-27, 2011. ISBN: 978-972-8692-61-2
50
Development of dynamic multi-layered bioprocess models
  • Excellence in Engineering for Innovation in Global Markets - Abstracts Book of the 3rd MIT Portugal Conference. Guimarães, Portugal, May 28-29, 21, 2012