Miguel Rocha

Associate Professor



Career

  • Since  2012: Associate Professor, Universidade do Minho
  • 2004 - 2012: Assistant Professor, Universidade do Minho

Qualifications

  • 2004: Doutoramento em Informática, Universidade do Minho

Roles and Responsibilities

  • Since  2015: Program Director, Master Program in Bioinformatics
  • 2013 - 2013: Member of the Scientific Steering Committee of the Research Unit, Computer Science and Technology Centre
  • 2010 - 2013: Director of Research Unit, Computer Science and Technology Centre
  • Since  2010: Member of the Scientific Steering Committee of Department, Department of Informatics
  • Since  2010: Member of Program Studies Steering Committee, Master Program in Bioinformatics - Biological Sciences
  • 2007 - 2010: Program Director, Master Program in Bioinformatics - Biological Sciences
  • 2005 - 2009: Associate Diretor of Research Unit, Computer Science and Technology Centre

Laboratory Management



Courses

  • Bioinformatics ( Master Program in Bioinformatics - TI )
  • Computation and Programming ( Integrated Master in Biological Engineering )
  • Bioinformatics ( Integrated Master in Biomedical Engineering )


Projects


Research Students


Recent Publications

1
MOSCA: an automated pipeline for integrated metagenomics and metatranscriptomics data analysis
  • Advances in Intelligent Systems and Computing, 803 (PACBB 2018), 183-191, 2019
2
Metabolite integration pipeline for the improvement of human metabolic models
  • Advances in Intelligent Systems and Computing, 803 (PACBB 2018), 192-199, 2019
3
A review on metabolomics data analysis for cancer applications
  • Advances in Intelligent Systems and Computing, 803 (PACBB 2018), 157-165, 2019
4
  • Cabral, Debora; Cardoso, Sara; Rocco, Silvana; Sforça, Maurício; Hengeltraub, Simone Fanan; Bauer, Cláudia; Rocha, Miguel; Maraschin, Marcelo
17α-ethinylestradiol analysis of endo- and exometabolome of Ulva lactuca (chlorophyta) by 1H-NMR spectroscopy and bioinformatics tools
  • Advances in Intelligent Systems and Computing, 803 (PACBB 2018), 216-223, 2019
5
  • Bauer, Claudia M.; Vilaça, Paulo; Ramlov, Fernanda; de Oliveira, Eva Regina; Cabral, Débora Q.; Schmitz, Caroline; Corrêa, Rafaela Gordo; Rocha, Miguel; Maraschin, Marcelo
In silico predictions for fucoxanthin production by the diatom Phaeodactylum tricornutum
  • Advances in Intelligent Systems and Computing, 803 (PACBB 2018), 139-148, 2019
6
Methods for automated genome-scale metabolic model reconstruction
  • Biochemical Society Transactions, 46(4), 931-936, 2018
7
Utilitarian placement of composite services
  • IEEE Transactions on Network and Service Management, 15(2), 638-649, 2018
8
Development of an information retrieval tool for biomedical patents
  • Computer Methods and Programs in Biomedicine, 159, 125-134, 2018
9
A review of dynamic modeling approaches and their application in computational strain optimization for metabolic engineering
  • Frontiers in Microbiology, 9, 1690-1690, 2018
10
A critical evaluation of automatic atom mapping algorithms and tools
  • Advances in Intelligent Systems and Computing, 616 (PACBB 2017), 257-264, 2017
11
Development of text mining tools for information retrieval from patents
  • Advances in Intelligent Systems and Computing, 616 (PACBB 2017), 66-73, 2017
12
  • Lopes, Susane; Moresco, Rodolfo; Peruch, Luiz Augusto Martins; Rocha, Miguel; Maraschin, Marcelo
UV-Vis spectrophotometry and chemometrics as tools for recognition of the biochemical profiles of organic banana peels (Musa sp.) according to the seasonality in southern Brazil
  • Advances in Intelligent Systems and Computing, 616 (PACBB 2017), 289-296, 2017
13
Characterization of the chemical composition of banana peels from southern Brazil across the seasons using nuclear magnetic resonance and chemometrics
  • Advances in Intelligent Systems and Computing, 616 (PACBB 2017), 321-328, 2017
14
  • Moresco, Rodolfo; Afonso, Telma; Uarrota, Virgílio G.; Navarro, Bruno Bachiega; Nunes, Eduardo da C.; Rocha, Miguel; Maraschin, Marcelo
Classification tools for carotenoid content estimation in Manihot esculenta via metabolomics and machine learning
  • Advances in Intelligent Systems and Computing, 616 (PACBB 2017), 280-288, 2017
15
  • Oliveira, Eva Regina; Wickert, Ester; Ramlov, Fernanda; Moresco, Rodolfo; Simão, Larissa; Navarro, Bruno B.; Bauer, Claudia; Cabral, Débora; Rocha, Miguel; Maraschin, Marcelo
Influence of solar radiation on the production of secondary metabolites in three rice (Oryza sativa) cultivars
  • Advances in Intelligent Systems and Computing, 616 (PACBB 2017), 297-304, 2017
16
Analysing algorithms and data sources for the tissue-specific reconstruction of liver healthy and cancer cells
  • Interdisciplinary Sciences-Computational Life Sciences, 9(1), 36-45, 2017
17
Development of a framework for metabolic pathway analysis-driven strain optimization methods
  • Interdisciplinary Sciences-Computational Life Sciences, 9(1), 46-55, 2017
18
Data-driven reverse engineering of signaling pathways using ensembles of dynamic models
  • PLoS Computational Biology, 13(2), 1-25, 2017
19
Metabolomics of Ulva lactuca Linnaeus (Chlorophyta) exposed to oil fuels: Fourier transform infrared spectroscopy and multivariate analysis as tools for metabolic fingerprint
  • Marine Pollution Bulletin, 114(2), 831-836, 2017
20
Non-targeted metabolomic profiling of maize landraces (Zea mays l.) combined with chemometric tools
  • International Journal of Biochemistry Research & Review, 20(1-IJBCRR.35832), 1-9, 2017
Full List