Miguel Rocha

Associate Professor



Career

  • Since  2012: Associate Professor, Universidade do Minho
  • 2004 - 2012: Assistant Professor, Universidade do Minho

Qualifications

  • 2004: Doutoramento em Informática, Universidade do Minho

Roles and Responsibilities

  • Since  2015: Program Director, Master Program in Bioinformatics
  • 2013 - 2013: Member of the Scientific Steering Committee of the Research Unit, Computer Science and Technology Centre
  • 2010 - 2013: Director of Research Unit, Computer Science and Technology Centre
  • Since  2010: Member of the Scientific Steering Committee of Department, Department of Informatics
  • Since  2010: Member of Program Studies Steering Committee, Master Program in Bioinformatics - Biological Sciences
  • 2007 - 2010: Program Director, Master Program in Bioinformatics - Biological Sciences
  • 2005 - 2009: Associate Diretor of Research Unit, Computer Science and Technology Centre

Laboratory Management



Courses

  • Bioinformatics ( Master Program in Bioinformatics - TI )
  • Computation and Programming ( Integrated Master in Biological Engineering )
  • Bioinformatics ( Integrated Master in Biomedical Engineering )


Projects


Research Students


Recent Publications

1
Utilitarian placement of composite services
  • IEEE Transactions on Network and Service Management, 15(2), 638-649, 2018
2
Development of an information retrieval tool for biomedical patents
  • Computer Methods and Programs in Biomedicine, 159, 125-134, 2018
3
A review of dynamic modeling approaches and their application in computational strain optimization for metabolic engineering
  • Frontiers in Microbiology, 9, 1690-1690, 2018
4
Methods for automated genome-scale metabolic model reconstruction
  • Biochemical Society Transactions, (In Press), 2018
5
A critical evaluation of automatic atom mapping algorithms and tools
  • Advances in Intelligent Systems and Computing, 616 (PACBB 2017), 257-264, 2017
6
Characterization of the chemical composition of banana peels from southern Brazil across the seasons using nuclear magnetic resonance and chemometrics
  • Advances in Intelligent Systems and Computing, 616 (PACBB 2017), 321-328, 2017
7
Development of text mining tools for information retrieval from patents
  • Advances in Intelligent Systems and Computing, 616 (PACBB 2017), 66-73, 2017
8
  • Lopes, Susane; Moresco, Rodolfo; Peruch, Luiz Augusto Martins; Rocha, Miguel; Maraschin, Marcelo
UV-Vis spectrophotometry and chemometrics as tools for recognition of the biochemical profiles of organic banana peels (Musa sp.) according to the seasonality in southern Brazil
  • Advances in Intelligent Systems and Computing, 616 (PACBB 2017), 289-296, 2017
9
  • Moresco, Rodolfo; Afonso, Telma; Uarrota, Virgílio G.; Navarro, Bruno Bachiega; Nunes, Eduardo da C.; Rocha, Miguel; Maraschin, Marcelo
Classification tools for carotenoid content estimation in Manihot esculenta via metabolomics and machine learning
  • Advances in Intelligent Systems and Computing, 616 (PACBB 2017), 280-288, 2017
10
  • Oliveira, Eva Regina; Wickert, Ester; Ramlov, Fernanda; Moresco, Rodolfo; Simão, Larissa; Navarro, Bruno B.; Bauer, Claudia; Cabral, Débora; Rocha, Miguel; Maraschin, Marcelo
Influence of solar radiation on the production of secondary metabolites in three rice (Oryza sativa) cultivars
  • Advances in Intelligent Systems and Computing, 616 (PACBB 2017), 297-304, 2017
11
Analysing algorithms and data sources for the tissue-specific reconstruction of liver healthy and cancer cells
  • Interdisciplinary Sciences-Computational Life Sciences, 9(1), 36-45, 2017
12
Development of a framework for metabolic pathway analysis-driven strain optimization methods
  • Interdisciplinary Sciences-Computational Life Sciences, 9(1), 46-55, 2017
13
Data-driven reverse engineering of signaling pathways using ensembles of dynamic models
  • PLoS Computational Biology, 13(2), 1-25, 2017
14
Metabolomics of Ulva lactuca Linnaeus (Chlorophyta) exposed to oil fuels: Fourier transform infrared spectroscopy and multivariate analysis as tools for metabolic fingerprint
  • Marine Pollution Bulletin, 114(2), 831-836, 2017
15
Optimizing segment routing using evolutionary computation
  • Procedia Computer Science, 110, 312-319, 2017
16
Non-targeted metabolomic profiling of maize landraces (Zea mays l.) combined with chemometric tools
  • International Journal of Biochemistry Research & Review, 20(1-IJBCRR.35832), 1-9, 2017
17
A chemometrics approach for nuclear magnetic resonance data to characterize the partial metabolome banana peels from southern Brazil
  • Journal of Integrative Bioinformatics, 14(4, SI), 2017
18
Genome-wide semi-automated annotation of transporter systems
  • IEEE/ACM Transactions on Computational Biology and Bioinformatics, 14(2), 443-456, 2017
19
  • Telma, Afonso; Rodolfo, Moresco; Uarrota, Virgilio G.; Navarro, Bruno Bachiega; Nunes, Eduardo da C.; Marcelo, Maraschin; Miguel, Rocha
UV-Vis and CIELAB based chemometric characterization of manihot esculenta carotenoid contents
  • Journal of Integrative Bioinformatics, 14(4, SI), 2017
20
  • Seyednasrollah, Fatemeh; Koestler, Devin C.; Wang, Tao; Stephen R. Piccolo; Roberto Vega; Russell Greiner; Christiane Fuchs; Eyal Gofer; Luke Kumar; Russell D. Wolfinger; Kimberly Kanigel Winner; Chris Bare; Elias Chaibub Neto; Thomas Yu; Liji Shen; Kald Abdallah; Thea Norman; Gustavo Stolovitzky; Howard R. Soule; Christopher J. Sweeney; Charles J. Ryan; Howard I. Scher; Oliver Sartor; Laura L. Elo; Fang Liz Zhou; Justin Guinney; James C. Costello; Prostate Cancer DREAM Challenge Community; Correia, Sara; Freitas, Ana Alão; Rocha, Miguel; Vieira, Vítor
A DREAM challenge to build prediction models for short-term discontinuation of docetaxel in metastatic castration-resistant prostate cancer
  • JCO Clinical Cancer Informatics, 2017
Full List