Publications in International Journals / Series (Conference Paper (International))

MOSCA: an automated pipeline for integrated metagenomics and metatranscriptomics data analysis

  • Advances in Intelligent Systems and Computing, 803 (PACBB 2018), 183-191, 2019

Publisher: Springer

Abstract

Metagenomics (MG) and Metatranscriptomics (MT) approaches open new perspectives on the interpretation of biological systems composed by complex microbial communities. Dealing with large sequencing datasets, to extract the desired information and interpret the results are big challenges associated with meta-omics studies. There are several bioinformatics pipelines for MG data analysis and less to MT. Up to date, none performs a complete analysis integrating both MG and MT data, including the assembly of reads into contigs, functional and taxonomic annotation of identified genes, differential ge ...

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