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1
Comparing results obtained from the Pathway Activity Profiling (PAPi) algorithm with 13C-based metabolic flux analysis
  • 7th International Conference of the Metabolomics Society. Cairns, Australia, June 27-30, 49-49, 2011
2
Monoclonal antibodies production in wave and stirred tank bioreactors
  • 1st Meeting of the Institute for Biotechnology and Bioengineering. Faro, Portugal, 15-16 May, 2009
3
State and specific growth estimation in heterologous protein production by Pichia pastoris
  • AICHE Journal, 58(10), 2966-2979, 2012
4
Observer based estimation in heterologous protein production by Pichia pastoris
  • BioSpain 2010 – 5th International Meeting on Biotechnology and BIOTEC 2010 Scientific Congress on Biotechnology. Pamplona, Spain, Sep 29th – Oct 1st, 267, 2010
5
Optimization of culture conditions to improve Helicobacter pylori growth in Ham's F-12 medium by response surface methodology
  • International Journal of Immunopathology and Pharmacology, 25(4), 901-909, 2012
6
Heterologous production of resveratrol in bacterial hosts: current status and perspectives
  • WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY, 34(122), 2018
7
Impact of the cultivation strategy on resveratrol production from glucose in engineered Corynebacterium glutamicum
  • Journal of Biotechnology, 265, 70-75, 2018
8
An adsorptive bioprocess for production and recovery of resveratrol with Corynebacterium glutamicum
  • Journal of Chemical Technology and Biotechnology, 93(6), 1661-1668, 2018
9
Metabolic Pathway Analysis 2015 - Programme and Abstracts
  • Braga: Biochemical Society, 2015.
10
Assessment of physiological conditions in E. coli fermentations by epifluorescent microscopy and image analysis
  • Biotechnology Progress, 25(3), 882-891, 2009
11
Footprinting microbial metabolites in nature and medicine
  • SYSMED 2012 - International Conference on Systems Medicine. Dublin, Irlande, Sep 10-13, 63-65, 2012
12
Metabolomic approaches for the characterization of metabolic bottlenecks in recombinant protein production processes
  • Book of Abstracts of the 2nd Meeting of the Institute for Biotechnology and Bioengineering. Braga, Portugal, 23-24 October, 22, 2010. ISBN: 978-972-97810-6-3
13
Metabolic responses to recombinant bioprocesses in Escherichia coli
  • Journal of Biotechnology, 164(3), 396-408, 2013
14
Metabolic modelling of stringent response in recombinant Escherichia coli
  • Conference Foundations of Systems Biology in Engineering: Abstracts. Vol. 2007, 2007
15
A systematic modeling approach to elucidate the triggering of the stringent response in recombinant E. coli systems
  • Advances in Intelligent and Soft Computing, 93, 313-320, 2011
16
Metabolomics as a tool to understand E. coli metabolic responses in recombinant processes
  • CHEMPOR 2011 - Book of Abstracts of the 11th International Chemical and Biological Engineering Conference. Lisbon, Portugal, Sep. 5-7, 5-5, 2011
17
Constraint-based approach for in silico Escherichia coli combined regulatory/metabolic modelling
  • Micro '07 - Biotec '07 - XXIII JPG: Livro de Actas do Congresso. Lisboa, Portugal, 30 Nov. - 2 Dec., 176, 2007
18
Reconstruction of a genome-scale metabolic model for Actinobacillus succinogenes
  • Copenhagen Biosciences Conferences - 7th Conference: Cell Factories and Biosustainability - Abstract Book. Copenhagen, Denmark, May 5-8, 42-43, 2015
19
Yeast metabolomics: sample preparation for a GC/MS-based analysis
  • In Valeria Mapelli. Methods in Molecular Biology, Vol. 1152: Yeast Metabolic Engineering, New York: Springer, 2014. ISBN: 978-1-4939-0562-1, 197-207
20
Application of a genome-scale metabolic model to the inference of nutritional requirements and metabolic bottlenecks during recombinant protein production in Escherichia coli
  • Microbial Cell Factories, 5 (Suppl 1)(S1), P52, 2006
21
Image analysis as a tool for viability and recombinant protein production assessment during E. coli fermentations
  • CHEMPOR 2005 - 9th International Chemical Engineering Conference. Coimbra, Portugal, 972-8055, 2005. ISBN: 9728055137
22
Metabolic footprint analysis of recombinant Escherichia coli strains during fed-batch fermentations
  • Molecular BioSystems, 7(3), 899-910, 2011
23
Applying a metabolic footprinting approach to characterize the impact of the recombinant protein production in Escherichia coli
  • Advances in Intelligent and Soft Computing, 74 (Advances in Bioinformatics), 193-200, 2010
24
Metabolic footprinting of Escherichia coli grown in fed-batch fermentation during recombinant protein production
  • New Biotechnology, 25(S1), S342, 2009
25
Investigating metabolic responses in recombinant E. coli cultures using metabolomics and fluxomics data
  • 3rd Meeting of the Institute for Biotechnology and Bioengineering - Book of Abstracts. Lisboa, Portugal, 16-17 March, 75-75, 2012
26
Influence of the RelA activity on E. coli metabolism by metabolite profiling of glucose-limited chemostat cultures
  • Metabolites, 2(4), 717-732, 2012
27
Digging out evidences on Escherichia coli stringent response from scientific literature
  • MicroBiotec09 - Book of Abstracts. Vilamoura, Portugal, 28-30 Nov, 30, 2009. ISBN: 978-972-97810-6-3
28
Uncovering mechanisms underlying the Escherichia coli stringent response: application of text mining approaches to identify meaningful relations in text documents
  • International Conference on Microbial Stress: from Molecules to Systems: Book of Abstracts. 2009
29
Stringent response of Escherichia coli: revisiting the bibliome using literature mining
  • Microbial Informatics and Experimentation, 1(1), 14, 2011
30
Network analysis of an integrated metabolic/regulatory model of Escherichia coli
  • Workshop Systems Biology in Medicine (European Science Foundation). Barcelona, Spain, May 8-10, 2008
31
An integrated analysis of the metabolic and regulatory networks of Escherichia coli K12
  • ICSB 2008 - Abstract Book of the 9th International Conference on Systems Biology. No. DS2-94, Göteborg, Sweden, August 23-27, 146, 2008
32
Reconstruction of a genome-scale metabolic model for Actinobacillus succinogenes
  • MPA2015 - Metabolic Pathway Analysis: Programme and Abstracts. No. MPA_23, Braga, Portugal, June 8-12, 28, 2015
33
A Systems Biology approach for the characterization of metabolic bottlenecks in recombinant protein production processes
  • 2nd Summer School in Proteomic Basics - "From Samples to Sequence". Brixen/Bressanone, Italy, July 31 - Aug. 6, 2005
34
A comparative proteome analysis of Escherichia coli ΔrelA mutant cells
  • Frontiers in Bioengineering and Biotechnology, 4(78), 1-12, 2016
35
Semantic annotation of biological concepts interplaying microbial cellular responses
  • BMC Bioinformatics, 12(460), 2011
36
13C-based Metabolic Flux Analysis
  • Bioinformatics Open Days 2012. Braga, Portugal, 1-2 March, 49, 2012
37
CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data
  • BMC Systems Biology, 8(123), 2014
38
Flexible and user friendly tools for the incorporation of fluxomics data into metabolic models
  • Metabolic Engineering X. No. 15, Vancouver, Canada, June 15-19, 10-11, 2014
39
Algorithms to infer metabolic flux ratios from fluxomics data
  • BIBM 2013 - IEEE International Conference on Bioinformatics and Biomedicine. Shanghai, China, 18-21 Dec., 205-209, 2013
40
Selective enrichment of hydrocarbonoclastic bacteria producing storage compounds of biotechnological relevance
  • ISME14 - 14th International Symposium on Microbial Ecology. Copenhagen, Denmark, 19-24 August, 80, 2012
41
Hydrocarbonoclastic bacteria: from bioremediation to bioenergy feedstock
  • FEBS-SystemsX-SysBio2011: From Molecules to Function - Joint FEBS/SystemsX Advanced Lecture Course on Systems Biology. Innsbruck, Austria, Feb. 26 - March 4, 2011
42
Hydrocarbonoclastic bacteria: from bioremediation to bioenergy feedstock
  • EBI-Wellcome Trust Summer School in Bioinformatics. Cambridge, UK, June 14-18, 2010
43
Combining high-value biotechnological processes: from wastewaters bioremediation to bacterial bioenergy feedstock production
  • Book of Abstracts of CEB Annual Meeting 2017. Braga, 6 July, 74, 2017. ISBN: 978-989-97478-8-3
44
Rhodococcus opacus B4: a promising bacterium for production of biofuels and biobased chemicals
  • AMB Express, 6(35), 1-11, 2016
45
Análise dos fluxos metabólicos em Saccharomyces cerevisiae a partir de D-xilulose como fonte de carbono utilizando Optflux
  • SINAFERM 2013 - XIX Simpósio Nacional de Bioprocessos. No. SP 01-05, Foz de Iguaçu, Brazil, 30 Julho - 2 Agosto, 1-5, 2013
46
Bioinformatics Open Days 2012 - Detailed Program
  • Braga: Universidade do Minho, 2012.
47
System analysis of metabolism in Helicobacter pylori
  • Semana da Escola de Engenharia 2010 - Engenharia para a Qualidade de Vida. Guimarães, Portugal, Oct. 11-15, 2010
48
Growth assessment of Helicobacter pylori in liquid medium – effect of aggregation
  • Semana da Escola de Engenharia 2011 - Uma Escola a Reinventar o Futuro. Guimarães, Portugal, Oct. 24-27, 2011. ISBN: 978-972-8692-61-2
49
Growth assessment methods for Helicobacter pylori in liquid medium
  • BioMicroWorld 2011 - IV International Conference on Environmental, Industrial and Applied Microbiology. Torremolinhos, Spain, 14th -16th September, 515-515, 2011
50
Comparison of H. pylori in silico metabolic model predictions with experimental data
  • Helicobacter, 14(4), 388-388, 2009