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1
Comparing results obtained from the Pathway Activity Profiling (PAPi) algorithm with 13C-based metabolic flux analysis
  • 7th International Conference of the Metabolomics Society. Cairns, Australia, June 27-30, 49-49, 2011
2
Effect of Tween 80 on bubble size and mass transfer in a bubble contactor
  • Chemical Engineering & Technology, 34(11), 1790-1796, 2011
3
Lipase-mediated hydrolysis of castor oil on its biotransformation into γ-decalactone by Yarrowia lipolytica
  • 1st European Congress of Applied Biotechnology. Berlin, Germany, September 25-29, 2011
4
Strategies for increasing aroma production by Yarrowia lipolytica: hydrolysis of substrate and cell immobilization
  • MicroBiotec'11 - Congress of Microbiology and Biotechnology 2011 (Book of Abstracts). Braga, Portugal, 1-3 December, 109-109, 2011. ISBN: 978-989-97478-1-4
5
Metabolomics as a tool to understand E. coli metabolic responses in recombinant processes
  • CHEMPOR 2011 - Book of Abstracts of the 11th International Chemical and Biological Engineering Conference. Lisbon, Portugal, Sep. 5-7, 5-5, 2011
6
A systematic modeling approach to elucidate the triggering of the stringent response in recombinant E. coli systems
  • Advances in Intelligent and Soft Computing, 93, 313-320, 2011
7
Metabolic footprint analysis of recombinant Escherichia coli strains during fed-batch fermentations
  • Molecular BioSystems, 7(3), 899-910, 2011
8
Stringent response of Escherichia coli: revisiting the bibliome using literature mining
  • Microbial Informatics and Experimentation, 1(1), 14, 2011
9
Semantic annotation of biological concepts interplaying microbial cellular responses
  • BMC Bioinformatics, 12(460), 2011
10
Hydrocarbonoclastic bacteria: from bioremediation to bioenergy feedstock
  • FEBS-SystemsX-SysBio2011: From Molecules to Function - Joint FEBS/SystemsX Advanced Lecture Course on Systems Biology. Innsbruck, Austria, Feb. 26 - March 4, 2011
11
Growth assessment methods for Helicobacter pylori in liquid medium
  • BioMicroWorld 2011 - IV International Conference on Environmental, Industrial and Applied Microbiology. Torremolinhos, Spain, 14th -16th September, 515-515, 2011
12
Growth assessment of Helicobacter pylori in liquid medium – effect of aggregation
  • Semana da Escola de Engenharia 2011 - Uma Escola a Reinventar o Futuro. Guimarães, Portugal, Oct. 24-27, 2011. ISBN: 978-972-8692-61-2
13
An approach towards genome-scale kinetic modelling: application to the Escherichia coli metabolism
  • ICSB 2011 - Abstract Book of the 12th International Conference on Systems Biology. No. PS 043, Heidelberg/Mannheim, Germany, August 28 - September 1, 74-75, 2011
14
Critical perspective on the consequences of the limited availability of kinetic data in metabolic dynamic modeling
  • IET Systems Biology, 5(3), 157-163, 2011
15
Towards a genome-scale kinetic modeling of Escherichia coli metabolism
  • 5th Annual Workshop on the Business-Government Interface: Systems and Synthetic Biology. Braga, Portugal, June 6, 2011
16
Towards genome-wide semi-automated transporter system annotations
  • ICSB 2011 - Abstract Book of the 12th International Conference on Systems Biology. No. PS 432, Heidelberg/Mannheim, Germany, August 28 - September 1, 230-231, 2011
17
The effect of bovine milk lactoferrin on human breast cancer cell lines
  • Journal of Dairy Science, 94(1), 66-76, 2011
18
A software platform for evolutionary computation with pluggable parallelism and quality assurance
  • IFIP International Conference on Artificial Intelligence Applications and Innovations. Vol. IFIPAICT 364(Part 2), Corfu, Greece, Sep 15-18, 45-50, 2011
19
Metabolic engineering approaches for strain optimization using evolutionary computation techniques
  • FEBS-SystemsX-SysBio2011: From Molecules to Function - Joint FEBS/SystemsX Advanced Lecture Course on Systems Biology. Innsbruck, Austria, Feb. 26 - March 4, 2011
20
Metabolic engineering approaches for strain optimization using evolutionary computation techniques
  • Semana da Escola de Engenharia 2011 - Uma Escola a Reinventar o Futuro. Guimarães, Portugal, Oct. 24-27, 2011. ISBN: 978-972-8692-61-2
21
  • Faria, José Pedro; Xia, F.; Devoid, S.; DeJongh, M.; Best, A.; Henry, C.S.; Stevens, R.
Modeling Microbial Life - Reconstruction of 3000 Metabolic Models
  • E3 Forum: Education, Employment and Entrepreneurship. Lisbon, Portugal, June 29-30, 2011
22
Novel “nano-phage” interfaces for wireless biosensors
  • Nanotech Conference and Expo 2011. Boston, U.S., June13-16th, 2011
23
Model interface for pathogens detection systems
  • MicroBiotec'11 - Congress of Microbiology and Biotechnology 2011 (Book of Abstracts). Braga, Portugal, 1-3 December, 469, 2011. ISBN: 978-989-97478-1-4
24
Butanol production by Clostridium pasteurianum using biodiesel-derived crude glycerol
  • Semana da Escola de Engenharia 2011 - Uma Escola a Reinventar o Futuro. Guimarães, Portugal, Oct. 24-27, 2011. ISBN: 978-972-8692-61-2
25
Characterization of carbon dioxide absorption in GLL systems
  • GLS 2011 - 10th Conference on Gas-Liquid and Gas-Liquid-Solid Reactor Engineering. Braga, Portugal, 26-29 June, 104-104, 2011
26
Revealing new biotechnological potentialities of the riboflavin producer fungus Ashbya gossypii by means of the construction and analysis of its metabolic network
  • MicroBiotec'11 - Congress of Microbiology and Biotechnology 2011 (Book of Abstracts). Braga, Portugal, 1-3 December, 424-424, 2011. ISBN: 978-989-97478-1-4
27
Optimization of a colorimetric assay for yeast lipase activity in complex systems
  • Analytical Methods, 3(4), 1008-1013, 2011
28
Empirical modelling as an experimental approach to optimize lactone production
  • Catalysis Science & Technology, 1(1), 86-92, 2011
29
Oxygen mass transfer into a biphasisc medium used for aroma production in an airlift bioreactor
  • GLS 2011 - 10th Conference on Gas-Liquid and Gas-Liquid-Solid Reactor Engineering. Braga, Portugal, 26-29 June, 169-169, 2011
30
Enhanced oil recovery under laboratory conditions using biosurfactant-producing microorganisms
  • MicroBiotec'11 - Congress of Microbiology and Biotechnology 2011 (Book of Abstracts). No. PS2: 38, Braga, Portugal, 1-3 December, 196-196, 2011. ISBN: 978-989-97478-1-4
31
Isolation of biosurfactant-producing microorganisms from oil samples for use in Microbial Enhanced Oil Recovery
  • ISMOS-3 - 3rd International Symposium on Applied Microbiology and Molecular Biology in Oil Systems. No. 06#16, Calgary, Alberta, Canada, 13-15 June, 63-63, 2011
32
Biosurfactant-producing lactobacilli: screening, production profiles and effect of medium composition
  • Applied and Environmental Soil Science, ID 201254, 1-9, 2011
33
Fed-batch cultures of Pichia pastoris under increased air pressure
  • Semana da Escola de Engenharia 2011 - Uma Escola a Reinventar o Futuro. Guimarães, Portugal, Oct. 24-27, 2011. ISBN: 978-972-8692-61-2
34
Valorisation of wastes for single cell oil production by Yarrowia lipolytica
  • MicroBiotec'11 - Congress of Microbiology and Biotechnology 2011 (Book of Abstracts). Braga, Portugal, 1-3 December, 2011. ISBN: 978-989-97478-1-4
35
Enhanced Pichia pastoris biomass under increased air pressure: batch and fed-batch strategies
  • Current Opinion in Biotechnology, 22(S1), S60-S60, 2011
36
Valorisation of glycerol by Pichia pastoris under increased air pressure
  • 1st European Congress of Applied Biotechnology. Berlin, Germany, September 25-29, 2011
37
Interpreting the regulatory interplay in E. coli metabolic pathways
  • Advances in Intelligent and Soft Computing, 93, 303-312, 2011
38
Challenges in integrating Escherichia coli molecular biology data
  • Briefings in Bioinformatics, 12(2), 91-103, 2011
39
  • Lourenço, A.; Conover, M.; Wong, A.; Nematzadeh, A.; Pan, F.; Shatkay, H.; Rocha, L.M.
A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature
  • BMC Bioinformatics, 12(Suppl 8), S12, 2011
40
Clickstream data warehousing for web crawlers profiling
  • WCE 2011 - World Congress on Engineering. Vol. I, London, UK, July 6-8, 1-6, 2011. ISBN: 978-988-18210-6-5
41
A study of the short and long-term regulation of E. coli metabolic pathways
  • Journal of Integrative Bioinformatics, 8(3), 183, 2011
42
Comparison between classical and molecular (FISH and PCR) methods for Lactobacillus spp. detection in Clinical Samples
  • Gordon Research Conference on Microbial Adhesion & Signal Transduction. Newport, Rhode Island, USA, 24th-29th July, 2011
43
Modeling formalisms in systems biology
  • AMB Express, 1(45), 1-14, 2011
44
Modeling enzymatic regulation in metabolic networks
  • Semana da Escola de Engenharia 2011 - Uma Escola a Reinventar o Futuro. Guimarães, Portugal, Oct. 24-27, 2011. ISBN: 978-972-8692-61-2
45
Exploring the gap between dynamic and constraint-based models of metabolism
  • 5th Annual Workshop on the Business-Government Interface: Systems and Synthetic Biology. Braga, Portugal, June 6, 2011
46
Identifying different types of bulking in an activated sludge system through quantitative image analysis
  • Chemosphere, 85(4), 643-652, 2011
47
Quantitative image analysis for sludge volume index and total suspended solids prediction in activated sludge system disturbances
  • CHEMPOR 2011 - Book of Abstracts of the 11th International Chemical and Biological Engineering Conference. Lisbon, Portugal, Sep. 5-7, 427-427, 2011
48
Characterization of activated sludge abnormalities by image analysis and chemometric techniques
  • Analytica Chimica Acta, 705(1-2), 235-242, 2011
49
Image analysis application for the study of activated sludge floc size during the treatment of synthetic and real fishery wastewater
  • Environmental Science and Pollution Research, 18(8), 1390-1397, 2011
50
Polyphosphates and poly-β-hydroxybutyrate granules identification through quantitative image analysis in enhanced biological phosphorus removal systems
  • MicroBiotec'11 - Congress of Microbiology and Biotechnology 2011 (Book of Abstracts). Braga, Portugal, 1-3 December, 148, 2011. ISBN: 978-989-97478-1-4