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1
Trypsin purification using magnetic azocasein composite
  • BIOIBEROAMÉRICA 2016 - Book of Abstracts. No. P-BM-17, Salamanca, Spain, June 5-8, 527, 2016
2
Trypsin purification using magnetic particles of azocasein-iron composite
  • SINATER 2016 - VIIth International Symposium on Diagnostics and Therapeutics. Recife, Brazil, Aug 29-31, 2016
3
Assessment of biological wastewater treatment systems by protozoa and metazoa monitoring and chemometrics analysis
  • CAC 2016 - XVI Chemometrics in Analytical Chemistry. Barcelona, Spain, June 6-10, 2016
4
Development of a sustainable bioprocess for the production of novel Xylooligosaccharides (XOS) and their potential application
  • 2016 MIT Portugal Annual Conference - 10 Years Engineering a Better Future. Braga, Portugal, 30 June, 10, 2016
5
Hair keratinmolecular dynamics studies
  • EJIBCE 2016 - IV Encontro de Jovens Investigadores de Biologia Computacional Estrutural. Oeiras, Portugal, Dec 21, 28, 2016
6
  • Bergdahl, Basti; Sonnenschein, Nikolaus; Machado, Daniel; Herrgård, Markus; Förster, Jochen
Chapter 6 - Genome-Scale Models
  • In John Villadsen (ed.). Fundamental Bioengineering, Vol. 1, Hoboken, USA: Wiley-Blackwell, 2016. ISBN: 978-3-527-33674-6, 143-182
7
  • Blanco-Míguez, Aitor; Gutiérrez-Jácome, Alberto; Fdez-Riverola, Florentino; Lourenço, Anália; Sánchez, Borja
A peptidome-based phylogeny pipeline reveals differential peptides at the strain level within Bifidobacterium animalis subsp. lactis
  • Food Microbiology, 60, 137-141, 2016
8
  • Blanco-Míguez, Aitor; Gutiérrez-Jácome, Alberto; Pérez-Pérez, Martín; Pérez-Rodríguez, Gael; Catalán-García, Sandra; Fdez-Riverola, Florentino; Lourenço, Anália; Sánchez, Borja
From amino acid sequence to bioactivity: The biomedical potential of antitumor peptides
  • Protein Science, 25(6), 1084-1095, 2016
9
  • Blanco-Míguez, Aitor; Meier-Kolthoff, Jan P.; Gutiérrez-Jácome, Alberto; Göker, Markus; Fdez-Riverola, Florentino; Sánchez, Borja; Lourenço, Anália
Improving phylogeny reconstruction at the strain level using peptidome datasets
  • PLoS Computational Biology, 12(12), e1005271, 2016
10
Biotechnological production of γ-decalactone, a peach like aroma, by Yarrowia lipolytica
  • WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY, 32(169), 1-8, 2016
11
Quantitative image analysis as a tool for Yarrowia lipolytica dimorphic growth evaluation in different culture media
  • Journal of Biotechnology, 217, 22-30, 2016
12
A comparative proteome analysis of Escherichia coli ΔrelA mutant cells
  • Frontiers in Bioengineering and Biotechnology, 4(78), 1-12, 2016
13
A phage-based assay for detection of pathogens
  • Bacteriophages: Theoretical and Practical Aspects of Their Application in Medicine, Veterinary and Food (3rd International Scientific Conference To the 100th Anniversary of the Discovery of Bacteriophages). Moscow, Russia, October 13-15, 13, 2016. ISBN: 978-5-9905908-2-3
14
Microbial treatment approaches for high-purity fructo-oligosaccharides production
  • RRB12 - 12th International Conference on Renewable Resources and Biorefineries. Ghent, Belgium, May 30 - June 1, 61-61, 2016
15
Rhodococcus opacus B4: a promising bacterium for production of biofuels and biobased chemicals
  • AMB Express, 6(35), 1-11, 2016
16
  • Correia, D.M.; Sargo, C.R.; Giordano, R.C.; Rocha, Isabel; Silva, A.J.; Zangirolami, T.C.
Análise de fluxos metabólicos com substrato isotopicamente marcado (13C-MFA) em S. typhimurium
  • COBEQ 2016 - XXI Congresso Brasileiro de Engenharia Química (Anais do Congresso Brasileiro de Engenharia Química). Fortaleza, Brazil, Sep 25-29, 1-8, 2016
17
An R package for integrated analysis of metabolomics and spectral data
  • Bioinformatics Open Days 2016 - Book of Abstracts. Braga, Portugal, Feb 18-19, 27-27, 2016
18
An R package for the integrated analysis of metabolomics and spectral data
  • Computer Methods and Programs in Biomedicine, 129, 117-124, 2016
19
Enhancing curcuminoid production using E. coli engineered strains
  • BIOIBEROAMÉRICA 2016 - Book of Abstracts. Salamanca, Spain, June 5-8, 517, 2016
20
Electronic tongue: a versatile tool for mineral and fruit-flavored waters recognition
  • Journal of Food Measurement and Characterization, 10(2), 264-273, 2016
21
  • Dias, Luís G.; Rodrigues, Nuno; Veloso, Ana C.A.; Pereira, José A.; Peres, António M.
Monovarietal extra-virgin olive oil classification: a fusion of human sensory attributes and an electronic tongue
  • European Food Research and Technology, 242(2), 259-270, 2016
22
Towards an improved version of Kluyveromyces lactis genome-scale metabolic model
  • PYFF6 - 6th Conference on Physiology of Yeast and Filamentous Fungi (Programme & Abstract Book). No. P58, Lisbon, Portugal, July 11-14, 90, 2016
23
  • Eckersley-Maslin, Mélanie A.; Svensson, Valentine; Krueger, Christel; Stubbs, Thomas M.; Giehr, Pascal; Krueger, Felix; Miragaia, Ricardo J.; Kyriakopoulos, Charalampos; Berrens, Rebecca V.; Milagre, Inês; Walter, Jörn; Teichmann, Sarah A.; Reik, Wolf
MERVL/Zscan4 network activation results in transient genome-wide DNA demethylation of mESCs
  • Cell Reports, 17(1), 179-192, 2016
24
  • Faria, José Pedro; Davis, James J.; Edirisinghe, Janaka N.; Taylor, Ronald C.; Weisenhorn, Pamela; Olson, Robert D.; Stevens, Rick L.; Rocha, Miguel; Rocha, Isabel; Best, Aaron A.; DeJongh, Matthew; Tintle, Nathan L.; Parrello, Bruce; Overbeek, Ross; Henry, Christopher S.
Computing and applying atomic regulons to understand gene expression and regulation
  • Frontiers in Microbiology, 7(1819), 1-14, 2016
25
Reconstruction of the regulatory network for Bacillus subtilis and reconciliation with gene expression data
  • Frontiers in Microbiology, 7(275), 1-11, 2016
26
Reconstruction of metabolic models for liver cancer cells
  • In Mohd Saberi Mohamad, Miguel P. Rocha, Florentino Fdez-Riverola, Francisco J. Domínguez Mayo, Juan F. De Paz. 10th International Conference on Practical Applications of Computational Biology & Bioinformatics, Vol. Advances in Intelligent Systems and Computing 477, Switzerland: Springer International Publishing, 2016. ISBN: 978-3-319-40125-6, 213-221
27
Oxygen mass transfer impact on citric acid production by Yarrowia lipolytica from crude glycerol
  • Biochemical Engineering Journal, 110, 35-42, 2016
28
Oxygen transfer rate and pH as major operating parameters of citric acid production from glycerol by Yarrowia lipolytica W29 and CBS 2073
  • Chemical Papers, 70(7), 869-876, 2016
29
Developing novel pathways for butanol production in E. coli
  • Metabolic Engineering 11. Kobe, Japan, 26-30 June, 2016
30
  • Fontenete, S.; Carvalho, D.; Lourenço, Anália; Guimarães, N.; Madureira, P.; Figueiredo, C.; Azevedo, N.F.
FISHji: new ImageJ macros for the quantification of fluorescence in epifluorescence images
  • Biochemical Engineering Journal, 112, 61-69, 2016
31
Produção de lipase a partir de Candida rugosa NRRL Y-95 utilizando meio de cultura contendo resíduos agroindustriais
  • COBEQ 2016 - XXI Congresso Brasileiro de Engenharia Química (Anais do Congresso Brasileiro de Engenharia Química). Fortaleza, Brazil, Sep 25-29, 1-8, 2016
32
Produção de lipase a partir de leveduras não convencionais isoladas do bagaço de caju
  • COBEQ 2016 - XXI Congresso Brasileiro de Engenharia Química (Anais do Congresso Brasileiro de Engenharia Química). Fortaleza, Brazil, Sep 25-29, 1-8, 2016
33
  • Gameiro, Denise; Pérez-Pérez, Martín; Pérez-Rodríguez, Gael; Monteiro, Gonçalo; Azevedo, Nuno F.; Lourenço, Anália
Computational resources and strategies to construct single-molecule metabolic models of microbial cells
  • Briefings in Bioinformatics, 17(5), 863-876, 2016
34
Acetylated bacterial cellulose coated with urinary bladder matrix as a substrate for retinal pigment epithelium
  • Colloids and Surfaces B- Biointerfaces, 139, 1-9, 2016
35
Insights into Pseudomonas aeruginosa and Candida albicans consortia challenged by antimicrobials
  • Biofilms 7 - Microbial Works of Art. No. P3: 76, Porto, Portugal, June 26-28, 2016. ISBN: 978-989-97478-7-6
36
Valorization of agro-industrial wastes towards the production of rhamnolipids
  • Bioresource Technology, 212, 144-150, 2016
37
Biosurfactants produced by marine microorganisms with therapeutic applications
  • Marine Drugs, 14(38), 1-15, 2016
38
Microbiology of petroleum reservoirs
  • In M. R. Riazi. MNL73: Exploration and Production of Petroleum and Natural Gas, West Conshohocken, PA, USA: ASTM International, 2016. ISBN: 978-0-8031-7068-1, 461-482
39
Insights on the molecular mechanisms underlying the anticancer activity of lactoferrin in metastatic cancer cell lines
  • SPB2016 - Book of Abstracts XIX National Congress of Biochemistry. No. P7/30, Guimarães, Portugal, Dec 8-10, 115, 2016
40
BIOMedical search engine framework: lightweight and customized implementation of domain-specific biomedical search engines
  • Computer Methods and Programs in Biomedicine, 131, 63-77, 2016
41
Structure and mode of action of cyclic lipopeptide pseudofactin II with divalent metal ions
  • Colloids and Surfaces B- Biointerfaces, 146, 498-506, 2016
42
Developing timely insights into Pseudomonas aeruginosa quorum sensing therapeutics through text mining
  • Biofilms 7 - Microbial Works of Art. Porto, Portugal, June 26-28, 54-54, 2016. ISBN: 978-989-97478-7-6
43
Effectiveness of Colistin-Antimicrobial peptides combinations against Pseudomonas aeruginosa and Staphylococcus aureus single- and double-species biofilms
  • ESGB/EPASG Annual International Meeting on Antimicrobial Resistance in Microbial Biofilms and Options for Treatment. Ghent, Belgium, Oct 5-7, 2016
44
Construction of antimicrobial peptide-drug combination networks from scientific literature based on a semi-automated curation workflow
  • Database-The Journal of Biological Databases and Curation, 2016, baw143, 2016
45
Reconstruction of the network of experimentally validated AMP-drug combinations against Pseudomonas aeruginosa infections
  • Current Bioinformatics, 11(5), 523-530, 2016
46
Insights into Pseudomonas aeruginosa quorum sensing therapeutics through text- and network-mining
  • ESGB/EPASG Annual International Meeting on Antimicrobial Resistance in Microbial Biofilms and Options for Treatment. Ghent, Belgium, Oct 5-7, 2016
47
  • Jouhten, Paula; Boruta, T.; Andrejev, S.; Pereira, Filipa; Rocha, Isabel; Patil, K.R.
Yeast metabolic chassis designs for diverse biotechnological products
  • Scientific Reports, 6(29694), 1-9, 2016
48
Microbial-based evaluation of foaming events in full-scale wastewater treatment plants by microscopy survey and quantitative image analysis
  • Environmental Science and Pollution Research, 23(15), 15638-15650, 2016
49
Use of olive pomace treated by ultrasounds as substrate for cellulases and xylanases production
  • BIOIBEROAMÉRICA 2016 - Book of Abstracts. Salamanca, Spain, June 5-8, 104, 2016
50
Ultrasounds pretreatment of olive pomace to improve xylanase and cellulase production by solid-state fermentation
  • Bioresource Technology, 214, 737-746, 2016