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1
Downscale fermentation for xylooligosaccharides production by recombinant Bacillus subtilis 3610
  • Carbohydrate Polymers, 205, 176-183, 2019
2
From lignocellulosic residues to market: Production and commercial potential of xylooligosaccharides
  • Biotechnology Advances, (In Press), 2019
3
One-step process for producing prebiotic arabino-xylooligosaccharides from Brewer's spent grain employing Trichoderma species
  • Food Chemistry, 270, 86-94, 2019
4
Resveratrol-loaded lipid nanocarriers are internalized by endocytosis in yeast
  • Journal of Natural Products, 82(5), 1240-1249, 2019
5
  • Bauer, Claudia M.; Vilaça, Paulo; Ramlov, Fernanda; de Oliveira, Eva Regina; Cabral, Débora Q.; Schmitz, Caroline; Corrêa, Rafaela Gordo; Rocha, Miguel; Maraschin, Marcelo
In silico predictions for fucoxanthin production by the diatom Phaeodactylum tricornutum
  • Advances in Intelligent Systems and Computing, 803 (PACBB 2018), 139-148, 2019
6
  • Blanco, Guillermo; Sánchez, Borja; Fdez-Riverola, Florentino; Margolles, Abelardo; Lourenço, Anália
In silico approach for unveiling the glycoside hydrolase activities in Faecalibacterium prausnitzii through a systematic and integrative large-scale analysis
  • Frontiers in Microbiology, 10(517), 2019
7
  • Blanco-Míguez, Aitor; Blanco, Guillermo; Gutierrez-Jácome, Alberto; Fdez-Riverola, Florentino; Sánchez, Borja; Lourenço, Anália
Computational prediction of the bioactivity potential of proteomes based on expert knowledge
  • Journal of Biomedical Informatics, 91(103121), 2019
8
In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota
  • Food Research International, 119, 221-226, 2019
9
  • Bobiano, Marta; Rodrigues, Nuno; Madureira, Marta; Dias, Luís G.; Veloso, Ana C.A.; Pereira, José A.; Peres, António M.
Unmasking sensory defects of olive oils flavored with basil and oregano using an electronic tongue-chemometric tool
  • Journal of the American Oil Chemists Society, 96(7), 751-760, 2019
10
  • Borges, Ana; Fonseca, Catarina; Carreira, Filipa; Rodrigues, Ivo; Henriques, Marta; Veloso, Ana C.A.; Peres, António M.
Valorisation of frozen chestnut by-products: technological challenges for the production of gluten-free flour
  • Journal of Food Measurement and Characterization, 13(1), 864-873, 2019
11
Yarrowia lipolytica as a microbial host for flavors and fragrances production
  • BIOTEC 2019 - Congreso Nacional de Biotecnología 2019. Vigo, Spain, June 10-13, 19-19, 2019. ISBN: 978-84-120734-1-6
12
  • Cabral, Debora; Cardoso, Sara; Rocco, Silvana; Sforça, Maurício; Hengeltraub, Simone Fanan; Bauer, Cláudia; Rocha, Miguel; Maraschin, Marcelo
17α-ethinylestradiol analysis of endo- and exometabolome of Ulva lactuca (chlorophyta) by 1H-NMR spectroscopy and bioinformatics tools
  • Advances in Intelligent Systems and Computing, 803 (PACBB 2018), 216-223, 2019
13
Enzymatic synthesis of lactulose using a novel biocatalyst
  • XX EuroFoodChem Congress (Book of Abstracts). Porto, Portugal, June 17-19, 225-225, 2019. ISBN: 978-989-8124-26-5
14
A review on metabolomics data analysis for cancer applications
  • Advances in Intelligent Systems and Computing, 803 (PACBB 2018), 157-165, 2019
15
Mapping Salmonella typhimurium pathways using 13C Metabolic Flux Analysis
  • Metabolic Engineering, 52, 303-314, 2019
16
Artificial intelligence in biological activity prediction
  • Advances in Intelligent Systems and Computing, 1005 (PACBB 2019), 164-172, 2019
17
Multi-step time series prediction intervals using neuroevolution
  • Neural Computing & Applications, (In Press), 2019
18
The biopolymer produced by Rhizobium viscosum CECT 908 is a promising agent for application in Microbial Enhanced Oil Recovery
  • New Biotechnology, 49, 144-150, 2019
19
Towards the reconstruction of integrated genome-scale models of metabolism and gene expression
  • Advances in Intelligent Systems and Computing, 1005 (PACBB 2019), 173-181, 2019
20
Big data in healthcare: management, analysis and future prospects
  • Journal of Big Data, 6(54), 2019
21
The metabolic model of the Quercus suber (cork oak tree) leaf
  • BOD 1018 - VIII Bioinformatics Open Days. Braga, Portugal, Feb 20-22, 14-16, 2019
22
iDS372, a phenotypically reconciled model for the metabolism of Streptococcus pneumoniae strain R6
  • Frontiers in Microbiology, 10(1283), 2019
23
The effect of different drying processes on physicochemical characteristics and antioxidant activity of Brassica spp. Cultivars from northern Atlantic Portugal
  • Chemical Engineering Transactions, 75, 421-426, 2019
24
  • Fdez-Riverola, Florentino; Mohamad, Mohd Saberi; Rocha, Miguel; De Paz, Juan F.; González, Pascual
Practical Applications of Computational Biology and Bioinformatics, 12th International Conference
  • Vol. AISC 803, Springer Nature, 2019. ISBN: 978-3-319-98701-9
25
  • Fdez-Riverola, Florentino; Rocha, Miguel; Mohamad, Mohd Saberi; Zaki, Nazar; Castellanos-Garzón, José A.
Practical Applications of Computational Biology and Bioinformatics, 13th International Conference
  • Vol. AISC 1005, Cham: Springer, 2019. ISBN: 978-3-030-23872-8
26
Genome-wide sequencing and metabolic annotation of Pythium irregulare CBS 494.86: understanding Eicosapentaenoic acid production
  • BMC Biotechnology, 19(41), 2019
27
Sequential bioprocessing of Ulva rigida to produce lignocellulolytic enzymes and to improve its nutritional value as aquaculture feed
  • Bioresource Technology, 281, 277-285, 2019
28
Design of a chromogenic substrate for elastase based on split GFP system – proof of concept for colour switch sensors
  • Biotechnology Reports, 22(e00324), 2019
29
Rational identification of a colorectal cancer targeting peptide through phage display
  • Scientific Reports, 9(3958), 2019
30
A Universidade do Minho e os novos Laboratórios Colaborativos
  • Revista Spot, 2019
31
Troppo - A Python framework for the reconstruction of context-specific metabolic models
  • Advances in Intelligent Systems and Computing, 1005 (PACBB 2019), 146-153, 2019
32
Selected Extended Papers of the 12th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB)
  • Journal of Integrative Bioinformatics, 16(1), 20190004, 2019
33
  • Fontes, Luísa; Lima, M.J. Reis; Bahri, Hamdi; Morais, Jorge Sá; Veloso, Ana C.A.; Lemos, Edite T.; Peres, António M.
Identifying the geographical origin of Serra da Estrela PDO cheeses using fatty acids profiles
  • XX EuroFoodChem Congress (Book of Abstracts). Porto, Portugal, June 17-19, 143, 2019. ISBN: 978-989-8124-26-5
34
Life cycle assessment (cradle-to-gate) of bacterial cellulose production
  • ICEER2019 - 6th International Conference on Energy and Environment Research (Book of Abstracts). No. E157, Aveiro, Portugal, July 22-25, 343-344, 2019. ISBN: 978-989- 54236-8-2
35
Microbial surfactants: alternative to vegetable oil surfactants
  • In V. Balan. Microbial Lipid Production: Methods and Protocols, Vol. Methods in Molecular Biology 1995, Springer New York, 2019. ISBN: 978-1-4939-9484-7, 383-393
36
Towards metabolic optimization of cho cells: in silico improvement of culture medium
  • FOSBE 2019 - 8th IFAC Conference on Foundations of Systems Biology in Engineering. Valencia, Spain, Oct 15-18, 2019
37
Biomolecular interactions of lysosomotropic surfactants with cytochrome c and its effect on the protein conformation: A biophysical approach
  • International Journal of Biological Macromolecules, 126, 1177-1185, 2019
38
Metal-biosurfactant complexes characterization: binding, self-assembly and interaction with bovine serum albumin
  • International Journal of Molecular Sciences, 20(12), 2864, 2019
39
Identification and microbial production of the raspberry phenol salidroside that is active against Huntington's disease
  • Plant Physiology, 179(3), 969-985, 2019
40
  • Kang, Kang; Bergdahl, Basti; Machado, Daniel; Dato, Laura; Han, Ting-Li; Li, Jun; Villas-Boas, Silas; Herrgård, Markus J; Förster, Jochen; Panagiotou, Gianni
Linking genetic, metabolic, and phenotypic diversity among Saccharomyces cerevisiae strains using multi-omics associations
  • GigaScience, 8(4), giz015, 2019
41
Environmental impact and biological removal processes of pharmaceutically active compounds: The particular case of sulfonamides, anticonvulsants and steroid estrogens
  • Critical Reviews in Environmental Science and Technology, (In Press), 2019
42
Simultaneous production of lignocellulolytic enzymes and extraction of antioxidant compounds by solid-state fermentation of agro-industrial wastes
  • Industrial Crops and Products, 137, 315-322, 2019
43
Integrated strategy for purification of esterase from Aureobasidium pullulans
  • Separation and Purification Technology, 209, 409-418, 2019
44
Waste cooking oils as feedstock for lipase and lipid-rich biomass production
  • European Journal of Lipid Science and Technology, 121, 1800188, 2019
45
  • López-Fernández, Hugo; Blanco-Míguez, Aitor; Fdez-Riverola, Florentino; Sánchez, Borja; Lourenço, Anália
DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research
  • Computers in Biology and Medicine, 107, 197-205, 2019
46
  • Maia, Paulo; Pérez-Rodríguez, Gael; Pérez-Pérez, Martín; Fdez-Riverola, Florentino; Lourenço, Anália; Azevedo, Nuno F.
Application of agent-based modelling to assess single-molecule transport across the cell envelope of E. coli
  • Computers in Biology and Medicine, 107, 218-226, 2019
47
HABIT - a webserver for interactive T cell neoepitope discovery
  • bioRxiv, (In Press), 2019
48
  • Marx, Ítala M.G.; Rodrigues, Nuno; Veloso, Ana C.A.; Pereira, José A.; Casal, Susana; Peres, António M.
Monitoring physicochemical and sensory attributes during debittering of stoned green olives
  • XX EuroFoodChem Congress (Book of Abstracts). Porto, Portugal, June 17-19, 92, 2019. ISBN: 978-989-8124-26-5
49
  • Menden, Michael P.; Wang, Dennis; Mason, Mike J.; Szalai, Bence; Bulusu, Krishna C.; Guan, Yuanfang; Yu, Thomas; Kang, Jaewoo; Jeon, Minji; Wolfinger, Russ; Nguyen, Tin; Zaslavskiy, Mikhail; Abante, Jordi; Abecassis, Barbara Schmitz; Aben, Nanne; Aghamirzaie, Delasa; Aittokallio, Tero; Akhtari, Farida S.; Al-lazikani, Bissan; Alam, Tanvir; Allam, Amin; Allen, Chad; de Almeida, Mariana Pelicano; Altarawy, Doaa; Alves, Vinicius; Amadoz, Alicia; Anchang, Benedict; Antolin, Albert A.; Ash, Jeremy R.; Aznar, Victoria Romeo; Ba-alawi, Wail; Bagheri, Moeen; Bajic, Vladimir; Ball, Gordon; Ballester, Pedro J.; Baptista, Delora; Bare, Christopher; Bateson, Mathilde; Bender, Andreas; Bertrand, Denis; Wijayawardena, Bhagya; Boroevich, Keith A.; Bosdriesz, Evert; Bougouffa, Salim; Bounova, Gergana; Brouwer, Thomas; Bryant, Barbara; Calaza, Manuel; Calderone, Alberto; Calza, Stefano; Capuzzi, Stephen; Carbonell-Caballero, Jose; Carlin, Daniel; Carter, Hannah; Castagnoli, Luisa; Celebi, Remzi; Cesareni, Gianni; Chang, Hyeokyoon; Chen, Guocai; Chen, Haoran; Chen, Huiyuan; Cheng, Lijun; Chernomoretz, Ariel; Chicco, Davide; Cho, Kwang-Hyun; Cho, Sunghwan; Choi, Daeseon; Choi, Jaejoon; Choi, Kwanghun; Choi, Minsoo; Cock, Martine De; Coker, Elizabeth; Cortes-Ciriano, Isidro; Cserzö, Miklós; Cubuk, Cankut; Curtis, Christina; Daele, Dries Van; Dang, Cuong C.; Dijkstra,Tjeerd; Dopazo,Joaquin; Draghici,Sorin; Drosou,Anastasios; Dumontier,Michel; Ehrhart,Friederike; Eid,Fatma-Elzahraa; ElHefnawi,Mahmoud; Elmarakeby,Haitham; vanEngelen,Bo; Engin, Hatice Billur; deEsch,Iwan; Evelo,Chris; Falcao, Andre O.; Farag,Sherif; Fernandez-Lozano, Carlos; Fisch,Kathleen; Flobak,Asmund; Fornari,Chiara; Foroushani, Amir B.K.; Fotso, Donatien Chedom; Fourches,Denis; Friend,Stephen; Frigessi,Arnoldo; Gao,Feng; Gao,Xiaoting; Gerold,JeffreyM.; Gestraud,Pierre; Ghosh,Samik; Gillberg,Jussi; Godoy-Lorite,Antonia; Godynyuk,Lizzy; Godzik,Adam; Goldenberg,Anna; Gomez-Cabrero,David; Gonen,Mehmet; deGraaf,Chris; Gray,Harry; Grechkin,Maxim; Guimera,Roger; Guney,Emre; Haibe-Kains,Benjamin; Han,Younghyun; Hase,Takeshi; He,Di; He,Liye; Heath,LenwoodS.; Hellton,KristofferH.; Helmer-Citterich,Manuela; Hidalgo,MartaR.; Hidru,Daniel; Hill,StevenM.; Hochreiter,Sepp; Hong,Seungpyo; Hovig,Eivind; Hsueh,Ya-Chih; Hu,Zhiyuan; Huang,JustinK.; Huang,R.Stephanie; Hunyady, László; Hwang,Jinseub; Hwang,TaeHyun; Hwang,Woochang; Hwang,Yongdeuk; Isayev,Olex; r; Don't Walk IV, Oliver Bear; Jack,John; Jahandideh, Samad; Ji,Jiadong; Jo,Yousang; Kamola,PiotrJ.; Kanev,GeorgiK.; Karacosta,Loukia; Karimi,Mostafa; Kaski,Samuel; Kazanov,Marat; Khamis,AbdullahM.; Khan,SuleimanAli; Kiani,NarsisA.; Kim,Allen; Kim,Jinhan; Kim,Juntae; Kim,Kiseong; Kim,Kyung; Kim,Sunkyu; Kim,Yongsoo; Kim,Yunseong; Kirk,PaulD.W.; Kitano,Hiroaki; Klambauer,Gunter; Knowles,David; Ko,Melissa; Kohn-Luque,Alvaro; Kooistra,AlbertJ.; Kuenemann,MelaineA.; Kuiper,Martin; Kurz,Christoph; Kwon,Mijin; vanLaarhoven,Twan; Laegreid,Astrid; Lederer,Simone; Lee,Heewon; Lee,Jeon; Lee,YunWoo; Leppäaho, Eemeli; Lewis,Richard; Li,Jing; Li,Lang; Liley,James; Lim,WengKhong; Lin,Chieh; Liu,Yiyi; Lopez,Yosvany; Low,Joshua; Lysenko,Artem; Machado,Daniel; Madhukar,Neel; Maeyer,DriesDe; Malpartida,AnaBelen; Mamitsuka,Hiroshi; Marabita,Francesco; Marchal,Kathleen; Marttinen,Pekka; Mason,Daniel; Mazaheri,Alireza; Mehmood,Arfa; Mehreen,Ali; Michaut,Magali; Miller,RyanA.; Mitsopoulos,Costas; Modos,Dezso; Moerbeke,MarijkeVan; Moo,Keagan; Motsinger-Reif,Alison; Movva,Rajiv; Muraru,Sebastian; Muratov,Eugene; Mushthofa,Mushthofa; Nagarajan,Niranjan; Nakken,Sigve; Nath,Aritro; Neuvial,Pierre; Newton,Richard; Ning,Zheng; Niz,CarlosDe; Oliva,Baldo; Olsen,Catharina; Palmeri,Antonio; Panesar,Bhawan; Papadopoulos,Stavros; Park,Jaesub; Park,Seonyeong; Park,Sungjoon; Pawitan,Yudi; Peluso,Daniele; Pendyala,Sriram; Peng,Jian; Perfetto,Livia; Pirro,Stefano; Plevritis,Sylvia; Politi,Regina; Poon,Hoifung; Porta,Eduard; Prellner,Isak; Preuer,Kristina; Pujana,MiguelAngel; Ramnarine,Ricardo; Reid,JohnE.; Reyal,Fabien; Richardson,Sylvia; Ricketts,Camir; Rieswijk,Linda; Rocha, Miguel; Rodriguez-Gonzalvez,Carmen; Roell,Kyle; Rotroff,Daniel; deRuiter,JulianR.; Rukawa,Ploy; Sadacca,Benjamin; Safikhani,Zhaleh; Safitri,Fita; Sales-Pardo,Marta; Sauer,Sebastian; Schlichting,Moritz; Seoane,JoseA.; Serra,Jordi; Shang,Ming-Mei; Sharma, Alok; Sharma, Hari; Shen, Yang; Shiga, Motoki; Shin, Moonshik; Shkedy, Ziv; Shopsowitz, Kevin; Sinai, Sam; Skola, Dylan; Smirnov, Petr; Soerensen, Izel Fourie; Soerensen, Peter; Song, Je-Hoon; Song, Sang Ok; Soufan, Othman; Spitzmueller, Andreas; Steipe, Boris; Suphavilai, Chayaporn; Tamayo, Sergio Pulido; Tamborero, David; Tang, Jing; Tanoli, Zia-ur-Rehman; Tarres-Deulofeu, Marc; Tegner, Jesper; Thommesen, Liv; Tonekaboni, Seyed Ali Madani; Tran, Hong; Troyer, Ewoud De; Truong, Amy; Tsunoda, Tatsuhiko; Turu, Gäbor; Tzeng, Guang-Yo; Verbeke, Lieven; Videla, Santiago; Consortium, AstraZeneca-Sanger Drug Combination DREAM
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
  • Nature Communications, 10(2674), 2019
50
Modulation of the central carbon metabolism of Corynebacterium glutamicum improves malonyl-CoA availability and increases plant polyphenol synthesis
  • Biotechnology and Bioengineering, 116(6), 1380-1391, 2019