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1
Recovery of acetoclastic activity in anaerobic granular sludge, monitored by methanogenic activity measurements and image analysis
  • Micro’05-Biotec’05: Livro de Actas do Congresso MICROBIOTEC’2005. Póvoa de Varzim, Portugal, 30 de Novembro - 3 de Dezembro, 272, 2005
2
Quantitative image analysis as a diagnostic tool for identifying structural changes during a revival process of anaerobic granular sludge
  • Water Research, 41(7), 1473-1480, 2007
3
Inoculum type response to different pHs on bio-hydrogen production from L-arabinose a component of hemicellulosic biopolymers
  • International Journal of Hydrogen Energy, 34(4), 1744-1751, 2009
4
Evaluation of filamentous fungi for the treatment of olive mill waste-waters
  • Book of Abstracts of the 2nd Meeting of the Institute for Biotechnology and Bioengineering. Braga, Portugal, 23-24 October, 186-186, 2010. ISBN: 978-972-97810-6-3
5
Lipase production by Aspergillus ibericus using olive mill wastewater
  • Bioprocess and Biosystems Engineering, 36(3), 285-291, 2013
6
  • Afonso, Beatriz S.; Azevedo, Ana G.; Gonçalves, Catarina; Amado, Isabel R.; Ferreira, Eugénio C.; Pastrana, Lorenzo M.; Cerqueira, Miguel A.
Bio-based nanoparticles as a carrier of β-carotene: production, characterisation and in vitro gastrointestinal digestion
  • Molecules, 25(19), 4497, 2020
7
  • Afonso, Julieta; Gonçalves, Céline; Costa, Marta; Ferreira, Débora; Santos, Lúcio; Longatto-Filho, Adhemar; Baltazar, Fátima
Glucose metabolism reprogramming in bladder cancer: hexokinase 2 (HK2) as prognostic biomarker and target for bladder cancer therapy
  • Cancers, 15(3), 982, 2023
8
Comparing results obtained from the Pathway Activity Profiling (PAPi) algorithm with 13C-based metabolic flux analysis
  • 7th International Conference of the Metabolomics Society. Cairns, Australia, June 27-30, 49-49, 2011
9
Decalactone production by Yarrowia lipolytica under increased O2 transfer rates
  • Biotechnology Letters, 27(20), 1617-1621, 2005
10
The use of enzymes and microorganisms for the production of aroma compounds from lipids
  • Food Technology and Biotechnology, 42(4), 327-336, 2004
11
  • Albuquerque, W. W. C.; Lopes, Marlene; Motta, M.A.; Belo, Isabel
Effects of static magnetic field in Saccharomyces cerevisiae cultures under aerobic and anaerobic conditions
  • BioMicroWorld 2009 - 3rd International Conference on Environmental, Industrial and Applied Microbiology (Fostering Cross-Disciplinary Applied Research in Microbiology and Microbial Biotechnology). Lisbon, Portugal, Dec. 2-4, 396, 2009
12
Colistin conditioning surfaces combined with antimicrobial treatment to prevent ventilator-associated infections
  • Biofouling, 38(6), 547-557, 2022
13
Perspectives on syngas fermentation
  • Book of Abstracts of CEB Annual Meeting 2017. Braga, 6 July, 13-13, 2017. ISBN: 978-989-97478-8-3
14
Anaerobic granular sludge as a microbial platform for the conversion of gaseous substrates at moderate pressures
  • AD16 - IWA World Conference on Anaerobic Digestion. Delft, The Netherlands, June 23-27, 2019
15
Pressurized syngas bioconversion: physiological and microbial characterization
  • Microbiotec'17 - Congress of Microbiology and Biotechnology 2017. No. P-137, Porto, Portugal, Dec 7-9, 240, 2017
16
Pressurized syngas bioconversion: physiological and microbial characterization
  • ICBM 2017 - 3rd International Conference on Biogas Microbiology (Abstract Book). Wageningen, The Netherlands, 1-3 May, 2017
17
Characterisation by image analysis of anaerobic sludge under shock conditions
  • Water Science and Technology, 41(12), 207-214, 2000
18
Characterisation by image analysis of anaerobic microbial aggregates under shock conditions
  • Proceedings of the 4th International Symposium on Environmental Biotechnology. Noordwijkerhout, The Netherlands, 10-12 April, 127-130, 2000. ISBN: 9067545945
19
Staged and non-staged anaerobic filters: performance in relation to physical and biological characteristics of microbial aggregates
  • Journal of Chemical Technology and Biotechnology, 75(7), 601-609, 2000
20
Image analysis as a tool to predict washout in sludge bed reactors through the quantification of microbial filamentous structures
  • Proceedings of the 10th World Congress on Anaerobic Digestion. Vol. I, Montreal, Canada, Aug 29th - Sep 2nd, 420-425, 2004
21
Trypsin purification using magnetic azocasein composite
  • BIOIBEROAMÉRICA 2016 - Book of Abstracts. No. P-BM-17, Salamanca, Spain, June 5-8, 527, 2016
22
Trypsin purification using magnetic particles of azocasein-iron composite
  • SINATER 2016 - VIIth International Symposium on Diagnostics and Therapeutics. Recife, Brazil, Aug 29-31, 2016
23
Trypsin purification using magnetic particles of azocasein-iron composite
  • Food Chemistry, 226, 75-78, 2017
24
BioTMPy: A Deep Learning-Based Tool to Classify Biomedical Literature
  • In Miguel Rocha, Florentino Fdez-Riverola, Mohd Saberi Mohamad, Roberto Casado-Vara. Practical Applications of Computational Biology & Bioinformatics, 15th International Conference (PACBB 2021), Springer International Publishing, 2021. ISBN: 978-3-030-86258-9, 115-125
25
  • Alves, Rafael A.; Zetty-Arenas, Ana M.; Demirci, Hüseyin; Dias, Oscar; Rocha, Isabel; Basso, Thiago O.; Freitas, Sindelia
Enhancing acetic acid and 5-hydroxymethyl furfural tolerance of C. saccharoperbutylacetonicum through adaptive laboratory evolution
  • Process Biochemistry, 101, 179-189, 2021
26
Development of text mining tools for information retrieval and extraction from patents
  • BOD 2017 - Bioinformatics Open Days (Book Conference). Braga, Feb 23-24, 2017
27
Development of text mining tools for information retrieval from patents
  • Advances in Intelligent Systems and Computing, 616 (PACBB 2017), 66-73, 2017
28
Wastewater protozoa survey by image processing and analysis methodologies
  • 1st Spanish-French Congress on Protistology. Sevilha, Espanha, June 04-06, 2008
29
Quantitative image analysis of polyhydroxyalkanoates inclusions from microbial mixed cultures under different SBR operation strategies
  • Environmental Science and Pollution Research, 24(17), 15148-15156, 2017
30
Morphological characterisation of microbial aggregates by image analysis
  • RECPAD'97 - 9th Portuguese Conference on Pattern Recognition. Coimbra, Portugal, 95-100, 1997
31
Aplicações de técnicas de processamento e análise de imagem em processos biotecnológicos
  • SINAFERM 2005 - Anais do XV Simpósio Nacional de Bioprocessos. Vol. 2005, 2005
32
Monitoring methanogenic fluorescence by image analysis
  • BIOTEC'98 - Book of Abstracts of the IV Iberian Congress on Biotechnology, I Ibero-American Meeting on Biotechnology (M. Mota and E.C. Ferreira, Eds.). Guimarães, Portugal, 12-15 July, 365, 1998. ISBN: 972-97810-0-1
33
Application of image analysis techniques in dispersed and aggregated bacteria determination in wastewater treatment processes
  • Proceedings of the 1st Image Analysis for Microscopy Conference. 34-35, 2006
34
Semi-automated recognition of protozoa by image analysis
  • Biotechnology Letters, 13(2), 111-118, 1999
35
Activated sludge monitoring of a wastewater treatment plant using image analysis and partial least squares regression
  • Analytica Chimica Acta, 544(1-2), 246-253, 2005
36
Activated sludge monitoring of a wastewater treatment plant using image analysis and partial least squares
  • 9th International Conference Chemometrics in Analytical Chemistry. Lisboa, Portugal, September 20-23, 111, 2004
37
Wine chemical characterization by near infrared spectroscopy and chemometric analysis
  • XIX Euroanalysis 2017 - Europe's Analytical Chemistry Meeting. Stockholm, Sweden, 28 Aug – 1 Sep, 157, 2017
38
Stalked protozoa identification by image analysis and multivariable statistical techniques
  • XIV Euroanalysis - Book of Abstract. Antwerp, Belgium, Sep 9-14, 2007
39
Stalked protozoa identification by image analysis and multivariable statistical techniques
  • Analytical and Bioanalytical Chemistry, 391(4), 1321-1325, 2008
40
Microbial evaluation of full-scale wastewater treatment plants by microscopy survey and chemometric analysis
  • Book of Abstracts of CEB Annual Meeting 2017. Braga, 6 July, 71, 2017. ISBN: 978-989-97478-8-3
41
Desenvolvimento de metodologias de análise de imagem para quantificar PHA, polifosfatos e glicogénio intracelular em estações de tratamento de águas residuais
  • ENaSB 2012 - 15º Encontro Nacional de Saneamento Básico. Évora, Portugal, 10-12 Out., 1-12, 2012
42
Development of image analysis methodologies to quantify intracellular PHA, polyphosphate and glycogen within wastewater treatment plants
  • 2nd Water Research Conference. No. p17, Singapore, Jan 20-23, 2013
43
  • Amaral, A. Luís; Leal, Cristiano S.; Vaz, A. Isabel; Vieira, J. Carvalho; Quinteiro, Andreia C.; Costa, M. Lourdes; Castro, L. Miguel
Use of chemometric analyses to assess biological wastewater treatment plants by protozoa and metazoa monitoring
  • Environmental Monitoring and Assessment, 190(9), 497, 2018
44
  • Amaral, A. Luís; Leal, Cristiano S.; Vaz, Ana Isabel; Vieira, Joana Carvalho; Quinteiro, Andreia; Costa, Maria de Lourdes; Castro, Luís Miguel
Assessment of biological wastewater treatment systems by protozoa and metazoa monitoring and chemometrics analysis
  • CAC 2016 - XVI Chemometrics in Analytical Chemistry. Barcelona, Spain, June 6-10, 2016
45
Efficiency benchmarking of wastewater service providers: An analysis based on the Portuguese case
  • Journal of Environmental Management, 321(115914), 2022
46
Drivers of water utilities’ operational performance – An analysis from the Portuguese case
  • Journal of Cleaner Production, 389(136004), 2023
47
Operational drivers of water reuse efficiency in Portuguese wastewater service providers
  • Utilities Policy, 83(101591), 2023
48
Drivers of energy efficiency in the Portuguese water industry
  • Environment, Development and Sustainability, (In Press), 2025
49
Evaluation of dimorphic Yarrowia lipolytica strains growth in different culture media by quantitative image analysis
  • MCM2015 - Multinational Conference on Microscopy. Eger, Hungary, Aug 23-28, 238-240, 2015
50
Automatic identification of activated sludge disturbances and assessment of operational parameters
  • Chemosphere, 91(5), 705-710, 2013